Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3640 192 9e-44 seq1230 178 2e-39 seq233 84.2 3e-11 >seq3640 Length=31815103 Score = 192 bits (212), Expect = 9e-44 Identities = 583/885 (66%), Gaps = 38/885 (4%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| ||| || ||||| |||||| ||||||| || || ||| |||| ||||||||| Sbjct 24468872 TTTCCTATCGAATACCATGATATTTGGCAAATGTATAAGAAAGCTGAGGCTTCCTTTTGG 24468813 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 |||| | | ||||| ||||| ||||||||| | | | ||||| ||| | |||| Sbjct 24468812 ACGGCCAAGGAGGTGGATCTTTCCAAGGACATTCAGCACTGGGAAGCTCTGAAGCCTGA- 24468754 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 |||| | | || |||||||| || |||| |||||||| | ||||| || || Sbjct 24468753 --TGAGAAATATTTCATATCGCATGTTCTGGCTTTCTTTGCAGCTAGTGATGGCATAGTA 24468696 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCG-TGCT 125235 || || || || || ||||| |||| |||| | ||| |||||| ||| || | Sbjct 24468695 AATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCA-GATTACAGAGG-CTCGCTGTT 24468638 Query 125236 TTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTG 125295 | || || |||||||| || || ||| |||| || |||||||| | || |||| Sbjct 24468637 TCTATGGCTTCCAAATTGCCATGGAAAACATGCATTCTGAAATGTATAGTCTCCTCATTG 24468578 Query 125296 ACATGTACATTCGCGATCCGCAACGTAAACACAT-GCTCTTTAACGCAATCGACACGGTG 125354 | | |||||| ||| | ||| | || || ||||| || || || | ||| || Sbjct 24468577 ATACTTACATTAAAGATTC-CAAAGAAAGGGAATATCTCTTCAATGCCATTTAAACGATG 24468519 Query 125355 CCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG 125414 || | | | || ||||| | |||| | || | ||| | ||| | || || | Sbjct 24468518 CCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGTTAGATTGGGGACAAAGAGGCTACC 24468459 Query 125415 TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTT 125474 || | || | | || || || || || || || |||||||||||||| ||| |||| Sbjct 24468458 TATGGAGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTT 24468399 Query 125475 GCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT----AA 125530 || | || || ||||||||||| || ||||| ||||| || || |||| | || Sbjct 24468398 GCATCAATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCT----CACATTTTCCAA 24468343 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAA 125590 || |||| |||| ||||| ||||||||||||||||| || |||| ||| Sbjct 24468342 TGAACTTATTAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTT---CAA 24468286 Query 125591 CTATCTGCGTCCCGA----GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCG 125646 | ||| || | | || | || ||| || ||||| | || | | | Sbjct 24468285 ACACCTG-GTACATAAACCGT-CGGA-GCAGAGAGTAAAAG-------AAATAATTATCA 24468236 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706 |||| || |||||| | | ||||| || || || || | || || | | ||||| | Sbjct 24468235 ATGCTGTTAGGATACAGGAGGAGTTCCTCACTGACGCCTTGCCTGTGAAGCTCATTGGGA 24468176 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766 |||| |||| | ||||| ||||||| || |||||||| || | || || || Sbjct 24468175 TGAATTGCATGTTAATGAAGCAGTACATTGAATTTGTGGCTGACAGACTTATGCTGGAAC 24468116 Query 125767 TGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT--C 125824 || | ||||| | | || | | ||||| ||||| || ||| || |||| | Sbjct 24468115 TGGGTTTTAGCAAGGTGTTCAGAGTAGAAAATCCATTTGACTTTATG--GAGAATATTGC 24468058 Query 125825 ACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 ||| || || ||||| ||||| || ||||||| || |||| || Sbjct 24468057 ACTGGAAGGAAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAATA 24468013 >seq1230 Length=159902609 Score = 178 bits (196), Expect = 2e-39 Identities = 480/732 (66%), Gaps = 2/732 (0%) Strand=Plus/Plus Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955 |||||| |||| ||||| ||| || ||||| || | |||||| | ||||| | Sbjct 40601898 CCTCTGCTGACAACCAAACATGTGTTCTGGAAGGGTGTTTTGGAGGAGTTGCTGTGGTTT 40601957 Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACACATTTGGAGCGGC 70015 || ||||| || || || ||||| ||| ||||| || | || ||| | | Sbjct 40601958 ATCAAGGGATCCACAAACGCTAAAGAACTGTCTTCGAAGGGAGTGAAGATCTGGGATGCC 40602017 Query 70016 AACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTG 70075 || | ||| | || ||||| || || ||| | |||| ||| || || || Sbjct 40602018 AATGGATCCCGAGACTTTCTGGATGGCCTGGGATTCTCTACCAGAGGAGAAGGGGACTTG 40602077 Query 70076 GGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAGACA 70135 || ||||| || || |||||||||||||| | || || | || ||| || || Sbjct 40602078 GGCCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCCGAATACAAAGATATGGATTCA 40602137 Query 70136 GACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCAAT 70195 || ||||| ||||| || ||||| ||| |||| | | | || || || |||| ||| | Sbjct 40602138 GATTATTCAGGTCAAGGAGTTGACCAACTGCAAAAAGTGATCGATACCATCAAAACCCAC 40602197 Query 70196 CCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCA 70255 || || || || ||| | ||||| | |||||||| |||| | | | ||||| Sbjct 40602198 CCTGACGACAGAAGAATCATCATGTGTGCTTGGAATCCAAAAGATCTCCCTCTGATGGCG 40602257 Query 70256 CTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGCTT 70314 || || ||||||||| | | || ||||| ||| | || ||| | |||| ||| Sbjct 40602258 CTGCCCCCGTGTCACGTCCTCTGC-CAGTTCTACGTGGTGGACGGCGAGCTGTCCTGCCA 40602316 Query 70315 AATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTC 70374 |||| ||| || | ||||||||||| || | || || ||||| || ||||| | Sbjct 40602317 GCTGTACCAGCGGTCGGGAGACATGGGCCTGGGCATGCCATTCAACATCGCCAGCTACGC 40602376 Query 70375 TATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACAC 70434 || | ||| ||||||| || ||||| ||| | || || | || || || || || Sbjct 40602377 CCTGCTCACGTACATGATCGCGCACATCACCCGGCTCAAGCCAGGTGACTTTGTTCATAC 40602436 Query 70435 CATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACG 70494 | || || || ||| | || | |||||||||||||| | ||| | || || | || Sbjct 40602437 TTTGGGAGATGCACACATTTACCTGAATCACATCGAGCCGCTGAAGATTCAGCTTCAGCG 40602496 Query 70495 GGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAATATTGACAGTTT 70554 || || |||||||| || ||||| | | ||| |||||||| | ||||| ||| Sbjct 40602497 AGAACCAAGACCTTTCCCGAAGCTCAAAATCCTTCGAAAAGTTGAGACAATTGATGATTT 40602556 Query 70555 TAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATGGTTCT 70614 || ||||| |||| | ||||||| |||| | || | ||| |||| | Sbjct 40602557 AAAAGCTGAAGACTTTAAGACTGAAGGTTATAATCCGCATCCAACTATTAAAATGGAAAT 40602616 Query 70615 GGCTGTTTAGAG 70626 |||||||||||| Sbjct 40602617 GGCTGTTTAGAG 40602628 >seq233 Length=141296404 Score = 84.2 bits (92), Expect = 3e-11 Identities = 214/321 (67%), Gaps = 6/321 (2%) Strand=Plus/Minus Query 70305 TGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTG 70364 |||| |||| |||| ||| || | ||||| ||| | || | | || ||||| | Sbjct 68913645 TGTCCTGCTGTTTGTACCAGTGGTCAGGAGACATAGGCTTTGGCATGCAGTTCAACATCG 68913586 Query 70365 CAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCAC-GAG 70423 | |||||| | || | || ||||||| || |||||||| || || ||||| || || Sbjct 68913585 CCAGCTATGCCCTGCTTACATACATGATAGCACACATTACTGGTCT-AAAGCCCAGTGAC 68913527 Query 70424 TTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTG 70483 || ||| | || | || | || || | || |||||||||| | |||| ||||| | Sbjct 68913526 TTTGTA-ATACTTTGGGAAATGCACATATTTACCTAAATCACATTGGGCCACTAAAGATT 68913468 Query 70484 CAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAAT 70543 || || | | || | |||||||| || ||||| | | | |||||||| | Sbjct 68913467 CAGCTTCAGCAAGAATCAAGACCTTTCCCAAAGCTCAAAATCATTTAAAAAGTTGAGACA 68913408 Query 70544 ATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATT 70603 ||||| ||| || ||| | |||| || |||||||| ||||||| || | ||| Sbjct 68913407 ATTGA---TTTCAAAGCCGAGAACTTTAATATTAAAGGTTATAATCCATATCCAACTATT 68913351 Query 70604 CCCATGGTTCTGGCTGTTTAG 70624 |||| ||||||||||| Sbjct 68913350 AAAATGGAAATGGCTGTTTAG 68913330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740988076843280