Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 seq233 96.9 3e-15 seq2763 95.1 9e-15 >seq1 Length=114275543 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 8597720 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 8597661 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||||| ||| |||||||| | |||| | ||| || || ||| Sbjct 8597660 AAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 8597601 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||||| ||||| ||| || Sbjct 8597600 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACT 8597541 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || || ||||| ||||| || |||||||| ||||| ||||| || Sbjct 8597540 TCAAGAGTGATAGTTTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 8597491 >seq233 Length=141296404 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| ||||| || || || |||||||| || Sbjct 109921662 CCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAC 109921721 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||||| ||| |||||||| | |||| | ||| || || ||| Sbjct 109921722 AAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 109921781 Query 15257 ATTCCTTCTTTGTC----ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTC 15312 ||||||||||| || | || ||| ||||||| ||||||| ||||| ||| Sbjct 109921782 ATTCCTTCTTTATCCTGGCCTTATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTC 109921841 Query 15313 TACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || | || || || || ||||| || |||||||| ||||| ||||| || Sbjct 109921842 GACCTCCAGAGTGATAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 109921895 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| ||||| | ||||| ||| | || || Sbjct 108315109 CCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTGCTTTTGAATGGTATAGTCAGAC 108315050 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||||| ||| |||||||| | |||| | ||| || || ||| Sbjct 108315049 AAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCTGGAGGA 108314990 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||||| ||||| ||| || Sbjct 108314989 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACC 108314930 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || || || || ||||| || |||||||| ||||| ||||| || Sbjct 108314929 TCGAGAGTGATAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 108314880 >seq2763 Length=65901067 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 824229 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 824288 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||||| ||| |||||||| | |||| | ||| || || ||| Sbjct 824289 AAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 824348 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||||| ||||| ||| || Sbjct 824349 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 824408 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | | || || || ||||| | |||||||| ||||| ||||| Sbjct 824409 TCGAGAGGGATAGTCTTTCCTGTACGGGTTTTTACGAAAATCTGCAT 824455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362145308854998