Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1 107 1e-18 seq233 100 2e-16 seq2763 93.3 3e-14 >seq1 Length=114275543 Score = 107 bits (118), Expect = 1e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| ||||| || ||||| ||||||||| | || || Sbjct 8597706 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 8597647 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 || | |||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 8597646 TTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 8597587 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| ||| || || || ||||| ||| || ||||| || Sbjct 8597586 CTGGATCTTGGCCT---TTACATTTTCTATTGTATCCGAGGGTTCAACTTCAAGAGTGAT 8597530 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||||||| ||||| |||||||||||||| ||||| || Sbjct 8597529 AGTTTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 8597491 >seq233 Length=141296404 Score = 100 bits (110), Expect = 2e-16 Identities = 157/223 (70%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| || || || ||||| ||||||||| | || || Sbjct 109921676 CAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 109921735 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 || | |||||| ||| ||| || | | |||||| || | || || |||||||| || Sbjct 109921736 TTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 109921795 Query 33277 G----CTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAG 33329 || ||| |||| |||| ||| || || || ||||| || ||||||| Sbjct 109921796 CTGGCCTTATCTTGGCCT---TTACATTTTCTATTGTATCCGAGGGTTCGACCTCCAGAG 109921852 Query 33330 TTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 | || || ||||| ||||| |||||||||||||| ||||| || Sbjct 109921853 TGATAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 109921895 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || |||| ||||| || | || ||||||||| | || || Sbjct 108315095 CAACACAAGATGAAGAGTGGACTGCTTTTGAATGGTATAGTCAGACAAAGTACGTCCATC 108315036 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 || | |||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 108315035 TTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATC 108314976 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| ||| || || || ||||| || || ||||| || Sbjct 108314975 CTGGATCTTGGCCT---TTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGAT 108314919 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||||| ||||| |||||||||||||| ||||| || Sbjct 108314918 AGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 108314880 >seq2763 Length=65901067 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| ||||| || ||||| ||||||||| | || || Sbjct 824243 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 824302 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 || | |||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 824303 TTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 824362 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| ||| || || || ||||| ||| || |||| || Sbjct 824363 CTGGATCTTGGCCT---TTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGGGAT 824419 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| ||| | |||||||||||||| ||||| Sbjct 824420 AGTCTTTCCTGTACGGGTTTTTACGAAAATCTGCAT 824455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318747770186844