Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3640 361 5e-95 seq1231 102 7e-17 seq1 102 7e-17 seq1230 91.5 1e-13 >seq3640 Length=31815103 Score = 361 bits (400), Expect = 5e-95 Identities = 620/893 (69%), Gaps = 20/893 (2%) Strand=Plus/Plus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || |||| | |||||||||| ||||| || ||||| ||||| || |||| Sbjct 24467990 TTGACATCACTCCCATTCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTC 24468049 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TC-GAACAATAGTATTT 12957 |||| | | |||||| |||||||| || || ||||||| || ||||| || Sbjct 24468050 CTTCCAGTGCAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAACACC-----TT 24468104 Query 12958 TTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAA 13017 || | || | ||| || | | ||||||||| ||||| || |||||||| |||||||| Sbjct 24468105 GCTAAAACCCAGTTCCAGCATAAGTCTGTCAGCCACAAATTCAATGTACTGCTTCATTAA 24468164 Query 13018 ATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTAT 13077 || ||||| || || | || ||||||| || || || | || | | | ||| Sbjct 24468165 CATGCAATTCATCCCAATGAGCTTCACAGGCAAGGCGTCAGTGAGGAACTCCTCCTGTAT 24468224 Query 13078 ATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATG 13137 ||| || | ||||| ||| ||| ||| | | ||| | || || | || || Sbjct 24468225 CCTAACAGCATTGATAATTATTTCTTTTACTCTCTGCTCCGACGGTTTATGTACCAGGTG 24468284 Query 13138 CTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT 13197 || ||||||| || ||||| |||||||| || || |||||||| || || || || || Sbjct 24468285 TTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATT 24468344 Query 13198 TGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGA 13257 |||||||| || || ||||| || |||||||| || | ||| ||||| | ||||| || Sbjct 24468345 GGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGA 24468404 Query 13258 ACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTAC 13316 ||| ||||| || || ||||| ||||| ||||| |||| |||| | ||| ||||| ||| Sbjct 24468405 ACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTA-CAACACGTTCTCCATAGGTAG 24468463 Query 13317 TATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376 | ||| | | ||| | |||||| | ||| || | || || || ||| Sbjct 24468464 CCTCTTTGTCCCCAATCTAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG 24468523 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436 ||| || || || || | ||| | |||| || ||| ||| |||||||| || | Sbjct 24468524 TTTAAATGGCATTGAAGAGATATTCCCTTTCTTTGGAATCTTTAATGTAAGTATCAATGA 24468583 Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 | ||||||||||| ||||| || |||||||| || |||||||| ||||| ||||| | Sbjct 24468584 GGAGACTATACATTTCAGAATGCATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGC 24468643 Query 13497 TAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCC 13556 |||||||| | ||||||||| | ||||| || | |||||||| || ||||| | Sbjct 24468644 GAGCCTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGC 24468703 Query 13557 CGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----GTTTTCT 13612 | |||||||| ||||| ||||| || | ||| || || | ||| || | ||| Sbjct 24468704 CATCACTAGCTGCAAAGAAAGCCAGAACATGCGATATGAAATATTTCTCATCAGGCTTC- 24468762 Query 13613 GACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAA 13672 | | ||| ||| | ||| || || || | ||| ||||||| | |||||||| Sbjct 24468763 -AGAGCTT--CCCAGTGCTGAATGTCCTTGGAAAGATCCACCTCCTTGGCCGTCCAAAAG 24468819 Query 13673 GAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAA 13725 ||||| |||| ||||||||||| ||| ||||| | || | || ||||| Sbjct 24468820 GAAGCCTCAGCTTTCTTATACATTTGCCAAATATCATGGTATTCGATAGGAAA 24468872 >seq1231 Length=116334831 Score = 102 bits (112), Expect = 7e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| || | Sbjct 53055243 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 53055302 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| | Sbjct 53055303 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 53055362 Query 13293 C 13293 | Sbjct 53055363 C 53055363 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| |||||||||||||| ||| || |||||||| || | Sbjct 53049409 AATCTGTCAGCTACAAACTCAATGTACTGTTTCATCAAAATGCAATTCATTCCAATGAGC 53049468 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 || |||| ||||||||||||||| Sbjct 53049469 CCAACTGGCAAAGCTTCTGTTAAAAA 53049494 Score = 82.4 bits (90), Expect = 7e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 12874 AACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAA 12933 ||||| ||| ||||| || ||||||||||||| ||| ||||| |||||||||||||| || Sbjct 53047903 AACTCGTTTCTCAAAGAAATTTGTTTTTCCTTGTAAAGAAATGTTTTCCATAAAATCAAA 53047962 Query 12934 AGGATTTT 12941 ||||||| Sbjct 53047963 GGGATTTT 53047970 >seq1 Length=114275543 Score = 102 bits (112), Expect = 7e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 5405 CGTGCACGATAGAGATGTACCTGTGAACGCTCATAACAGTGACGAAAAACATTCCACTGT 5464 |||| ||||||| | |||||||| |||||||| | |||| ||| ||||| | ||| Sbjct 30935607 CGTGGACGATAGCCAGGTACCTGTCCACGCTCATGAGGGTGATGAAGAACATGCTGCTGA 30935666 Query 5465 AAAACCCCACATAATAAAATCCAGACACTATTTTACACGTAAAATTTCCAAATATCCACT 5524 | || || | |||||||||||||| || | ||| ||| | | | ||||| | ||||| Sbjct 30935667 AGAAGCCAATGTAATAAAATCCAGAGACCACTTTGCACATCACGGTCCCAAACACCCACT 30935726 Query 5525 GATCTAACTGATAATGTATTTGAAATGGAAATGACATAACAAATAACAGATCGGATATGG 5584 | || | |||||| || | ||||| || || || | ||||| | ||| ||||| | || Sbjct 30935727 GGTCCAGCTGATAGTGGGTCTGAAAGGGGAAGGAGAAGACAAAGAGCAGGTCGGACAGGG 30935786 Query 5585 C 5585 | Sbjct 30935787 C 30935787 >seq1230 Length=159902609 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 13414 GTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGC 13473 |||| ||| |||||||| || | | ||||||||||| ||||| || |||||||| || Sbjct 150438693 GTCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 150438752 Query 13474 TATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 |||||||| ||||| ||||| | ||| |||| | ||||||||| Sbjct 150438753 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTC 150438797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430942070552556