Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq3973 161 9e-35 >seq3973 Length=36798880 Score = 161 bits (178), Expect = 9e-35 Identities = 127/152 (84%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | ||||||||||| ||||| ||| |||| ||||||||| Sbjct 30404664 GGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTCTACCTGGAGGAGGTGATG 30404605 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 |||||||| || || ||||| |||||||||||||||||||| ||||| ||||| || ||| Sbjct 30404604 CCGCAGGCTGAGAACCACGGCCCGGACATCAAAGAGCACGTGAACTCCCTGGGGGAGAAG 30404545 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || ||||||||| | || || ||||| ||||| Sbjct 30404544 CTGAAAACGCTGAGGCTGCGGCTGCGGCGCTG 30404513 Score = 82.4 bits (90), Expect = 7e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 129104 AGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACAT 129163 ||| || ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| Sbjct 30402301 AGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACATAGAATCCTACAT 30402242 Query 129164 GAC 129166 ||| Sbjct 30402241 GAC 30402239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447707427155360