Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq1230 291 6e-74 seq3188 114 9e-21 seq233 91.5 1e-13 >seq1230 Length=159902609 Score = 291 bits (322), Expect = 6e-74 Identities = 413/578 (71%), Gaps = 2/578 (0%) Strand=Plus/Minus Query 25388 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTA 25447 |||||||| ||| || || | || |||||| |||||||||| || | ||||| |||||| Sbjct 40602514 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGAATCTTCAGCGGCTCGATGTGATTCAGGTA 40602456 Query 25448 GACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGC 25507 | ||| || ||||||| ||| || ||||| || || || | |||| ||| | || || Sbjct 40602455 AATGTGTGCATCTCCCAAAGTATGAACAAAGTCACCTGGCTTGAGCCGGGTGATGTGCGC 40602396 Query 25508 CATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTC 25567 |||||||||||||| || ||||||||||||||| || || | || | ||||||| Sbjct 40602395 GATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAATGGCATGCCCAGGCCCATGT- 40602337 Query 25568 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACA 25627 | ||||||| |||||| ||||| || || ||||| |||| |||||| ||||| || | Sbjct 40602336 CTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTCCACCACGTAGAACTGGCAGA 40602277 Query 25628 TGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGA 25687 | || ||||| || || || || || | ||||| || ||||| || |||| || Sbjct 40602276 GGACGTGACACGGGGGCAGCGCCATCAGAGGGAGATCTTTTGGATTCCAAGCACACATGA 40602217 Query 25688 TGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCA 25747 |||| | ||||| || |||| | |||| ||| |||||||| || || | Sbjct 40602216 TGATTCTTCTGTCGTCAGGGTGGGTTTTGATGGTATCGATCACTTTTTGCAGTTGGTCAA 40602157 Query 25748 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACT 25807 | || || || || |||| ||| || |||| || || || |||| |||||||| Sbjct 40602156 CTCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACT 40602097 Query 25808 GGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCA 25867 |||| || || || || || | ||| || ||| | ||| || ||| ||||| Sbjct 40602096 GGAAGCCATAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTAGAGAATCCCAGGCCATCCA 40602037 Query 25868 AAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGG 25927 |||||||| ||| |||||||| ||||||||||| || |||||| || || ||||| | Sbjct 40602036 GAAAGTCTCGGGATCCATTGGCATCCCAGATCTTCACTCCCTTCGAAGACAGTTCTTTAG 40601977 Query 25928 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCC 25965 ||||||||| || ||| |||||||||| |||| || Sbjct 40601976 CGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCC 40601939 >seq3188 Length=83067054 Score = 114 bits (126), Expect = 9e-21 Identities = 125/165 (76%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 |||||||| | || || |||||||||||||| || ||||||||||||||| || || Sbjct 66355481 AGCCCGGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAACGGC 66355422 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || || | ||||||| | ||||||| |||||| ||||| || || ||||| |||| Sbjct 66355421 ACGCCCAGGCCCATGT-CTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTCCAC 66355363 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 |||||| ||||| || | || || ||||| || || || || || Sbjct 66355362 CACGTAGAACTGGCAGAGGGCGTGACACGGGGGCAGCGCCATCAG 66355318 Score = 96.9 bits (106), Expect = 2e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| || || || |||| |||||||||||| || || || || || | ||| Sbjct 66352269 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 66352210 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || ||| | ||| || ||| ||||| |||||||| ||| |||||||| || Sbjct 66352209 CCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCCAGAAAGTCTCGGGATCCATTGGCATC 66352150 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||||| || |||||| || | ||||| | ||||||||| || Sbjct 66352149 CCAGATCTTCACTCCCTTCGAAGACAATTCTTTAGCGTTTGTGGATCC 66352102 >seq233 Length=141296404 Score = 91.5 bits (100), Expect = 1e-13 Identities = 217/324 (67%), Gaps = 3/324 (1%) Strand=Plus/Plus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 ||||||||| ||| | || || |||||| |||| || || | | ||||| |||| Sbjct 68913438 TGGGAAAGG-TCTTGATTCTTGCTGAAGCTGAATCTTTAGTGGCCCAATGTGATTTAGGT 68913496 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | | || || | ||||| ||| | ||||| || | || | ||| || |||| || | Sbjct 68913497 AAATATGTGCATTTCCCAAAGTATT-ACAAAGTCACTGGGCTTTAGACCAGTAATGTGTG 68913555 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 | |||||||| || || || |||||||||||||| || | | || || || |||| Sbjct 68913556 CTATCATGTATGTAAGCAGGGCATAGCTGGCGATGTTGAACTGCATGCCAAAGCCTATGT 68913615 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626 | || |||| |||||| | || || ||||| || | ||| || ||||| || Sbjct 68913616 -CTCCTGACCACTGGTACAAACAGCAGGACAGCTCATCATTCACCACATAGAACTGGCAG 68913674 Query 25627 ATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACG 25686 | || | |||| |||| || | || || | |||| || |||| || |||| | Sbjct 68913675 AGGGCATGGCACAGAGGCAGCGACATCAGAGGAAGAACTTTTGGATTCCCAGCACACATG 68913734 Query 25687 ATGATGCACCTGTCTTCTGGGTTG 25710 ||||| | ||||| | |||||| Sbjct 68913735 ATGATTCTTCTGTCATGAGGGTTG 68913758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340105771411494