Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq3973 141 1e-28 >seq3973 Length=36798880 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| ||||||| ||||||||||| ||||||||||| || | Sbjct 30404666 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTCTACCTGGAGGAGGTGA 30404607 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||||||| || || | ||| || |||||||||||||||||| ||||| |||| Sbjct 30404606 TGCCGCAGGCTGAGAACCACGGCCCGGACATCAAAGAGCACGTGAACTCCCTGGGGGAGA 30404547 Query 10260 ATCTAAAGACCCTAAGGCTTCGCTTGCG 10287 | || || || || ||||| || |||| Sbjct 30404546 AGCTGAAAACGCTGAGGCTGCGGCTGCG 30404519 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||||||||||||||| |||||||| || || ||||| | Sbjct 30402314 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 30402255 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||| | |||||||| ||||| || Sbjct 30402254 TAGAATCCTACATGACAATGAAGAT 30402230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547326665281280