Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq3973 174 2e-38 seq1582 131 2e-25 >seq3973 Length=36798880 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || || | |||||||||||| ||| |||| || |||||||||||| Sbjct 11887883 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCGCACACT 11887942 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 | ||| ||||||| |||||||| || ||||||||||| || ||||||||||| ||||| Sbjct 11887943 CGGTTATGTTCCCGCAGCCAGATGGTGGCGTACATCATTAGGCCAGGCACCAGACCAAAG 11888002 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | ||| | ||| || | | ||||| || ||||| | Sbjct 11888003 ACCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGGATGTGAGGAGGGTACATCATCTCT 11888062 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| ||||||| ||| || ||||| |||| Sbjct 11888063 ACCTGAGTATCTTTGACTGTGGGAGGATACACTTCTCCATCAATTATCT 11888111 Score = 154 bits (170), Expect = 2e-32 Identities = 217/305 (71%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 8672 GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATA 8731 ||||| ||| || | || ||||| || || || || | |||| |||||||| || Sbjct 11886156 GGAACGTTGAATGCAGTAAAGGGACAGCCCTTCACATTATTGCAGATGAGAGACTGAATT 11886215 Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 | ||| | |||| ||| ||| || || ||||| || || ||||| || |||||||| Sbjct 11886216 GAGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTCGGCTTCCAGTAG 11886275 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 | || ||||| ||| | || ||||||| ||||| | ||| || || || || | || Sbjct 11886276 TCAGGAGAGCATATGGCATTACCCATGAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCC 11886335 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | ||| | ||||| |||||||||| |||||||||||||| |||| | ||| ||| Sbjct 11886336 ACCATGGTTTCACCAAAGATGGCGTCTGGACGGGGCTTTTCTACCAGCAGGGCGGGGTAT 11886395 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971 | ||||| ||| || ||||| || || || || | || ||||| |||||||| || Sbjct 11886396 AGCTCCATAGCATCAATGTCCCCATAGAGTGCTTCCAACTCTGCAGCCATTTCCTTCTCA 11886455 Query 8972 CCTGT 8976 ||||| Sbjct 11886456 CCTGT 11886460 Score = 122 bits (134), Expect = 1e-22 Identities = 121/157 (77%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | ||| Sbjct 11889045 CTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAAA 11889104 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 ||||| || || || || ||| |||| || || ||||| | || |||||||||||||| Sbjct 11889105 AACTGATGGGTAAAGTGCTGGGCAAAGAATGCGAACATCATATTTGTGCCCTGGGGATCA 11889164 Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || |||| | |||| |||||| ||||||||||| Sbjct 11889165 GGGATGAACTTTCTCCTTAGAAGAAATTTTTCCACAA 11889201 Score = 98.7 bits (108), Expect = 1e-15 Identities = 184/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | ||||| |||||||| ||||| ||||| || | |||||||| || || | Sbjct 11887291 CTTACCCTCCCAGCAATTTGTTTGGTGAATGATTCCACAAACTGGGTAAGTCCATGTTCC 11887350 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATG-TAGTCATACTTTGTTTTATCAATCTC 9440 | || || || ||||| || | ||| | || |||| || | | |||||| | Sbjct 11887351 AGTAGAATAGAGTTGTTATAGA-GAAACTGTTGATAGTTGTATTCCTGATCATCAATTTG 11887409 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 ||| || ||||||| || | |||||||||||| | |||||||||| | | ||||| Sbjct 11887410 AAAGGCGTCCGGCAGCAGGGGATGCCAGTGATAGAGTGTGTTAAACTCAGCAGCGATACG 11887469 Query 9501 ATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559 || ||||||||||| | | ||| ||||| || || | |||| || | |||| Sbjct 11887470 GTTCTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGT 11887528 Query 9560 GGTAGCCGCTGAGCTGCTGAACATA 9584 | ||||| || | ||||| ||||| Sbjct 11887529 GATAGCCACTCAAGTGCTGTACATA 11887553 >seq1582 Length=98468360 Score = 131 bits (144), Expect = 2e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||||||| ||| || ||||| || || ||||| || |||||||| | || ||| Sbjct 85098369 TTGACGATGTTAAAGCCTGTCTCTCCACCAAACGTGCTCGGCTTCCAGTACTCTGGAGAG 85098310 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| ||| | | ||| |||||||||||||| |||||||| | ||| | || ||| Sbjct 85098309 CAGATGGGATTCCCTAGGAGACCTTTGAGGGAAAAGGGAGCCCCAATCTCTATCATACTC 85098250 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || ||||||| || || || |||||||| | | || | ||| ||||||| Sbjct 85098249 TCCCCAAAGATGGAGTCCGGTAGGCACTTTTCCAGAAGCAGCCCTGGGTAGAACTCCAAG 85098190 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || |||||||||||||| || || | || || || || ||||| ||||||| Sbjct 85098189 GCATCGATGTCTCCGTACAGCTCCTCCAACTCTGCTGCCATCTCCTTCTCTCCTG 85098135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708456799332320