Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3640 120 3e-22 seq520 111 1e-19 seq3641 102 7e-17 seq4347 98.7 9e-16 seq2763 98.7 9e-16 seq1 96.9 3e-15 seq1230 95.1 1e-14 seq233 93.3 4e-14 seq3972 86.0 6e-12 >seq3640 Length=31815103 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| || ||||| ||||| |||| |||||||||| || || || || || | ||| || Sbjct 21636589 TTAGACACCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTA 21636530 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 || | ||| ||| |||||||| || ||| ||||||| | || |||||||| Sbjct 21636529 GTCAGAGAGGGTGCGTCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGATC 21636470 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 ||||| || ||||| ||||| | || ||||||||||| | | ||||| | | Sbjct 21636469 AGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGG 21636410 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | |||||||| || || || || || ||||||||||||||||| Sbjct 21636409 CTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 21636356 >seq520 Length=73916538 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| || ||||| ||||| |||| |||||||||| || || || || || | ||| || Sbjct 72484090 TTAGACACCTCCCCTCAAGCGCAGGACCAAGTGCATGGTGGACTCTTTCTGGATGTTGTA 72484149 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 || | ||| ||| |||||||| || || ||||||| | || ||| |||| Sbjct 72484150 GTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCGGATC 72484209 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 || ||||| ||||| ||||| | || ||||||||||| | | || ||| | | Sbjct 72484210 AGGGGGAATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCACTGGG 72484269 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | |||||||| || || || || || ||||||||||||||||| Sbjct 72484270 CTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 72484323 Score = 86.0 bits (94), Expect = 6e-12 Identities = 111/152 (73%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| || | ||||| ||||| || || ||||| || | ||| || ||| | Sbjct 72484325 CCACCTCTCAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 72484384 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||||||| || ||| ||||||| | || |||||||| || ||| Sbjct 72484385 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGA 72484444 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 | ||||| ||||| | || ||||||||||| Sbjct 72484445 -TGCCTTCCTTGTCTTGGATCTTTGCCTTGAC 72484475 >seq3641 Length=30143674 Score = 102 bits (112), Expect = 7e-17 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| || | ||||| ||||| || || || || || | ||| ||||| Sbjct 24919902 CCACCTCTCAGACGAAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGAA 24919843 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||||||||||||||| || ||||| || | | ||||| || || || Sbjct 24919842 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCCCAAATATCAGACGCTGCTGGTCAGGTGGG 24919783 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | ||||| || ||||| | | |||||| | | ||||| Sbjct 24919782 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGAC-ATTCTCATGGTGTCACTGGGCTCGACC 24919724 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||||||| | || || || || ||||||||||||||||| Sbjct 24919723 TCAAGGGTGATGG---TCCCCGTCAGGGTCTTCACAAAGATCTGCAT 24919680 >seq4347 Length=47401472 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| ||| |||||||||| || || || || || | ||| || || Sbjct 19988517 CCTCCCTTCAAGTGCAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 19988576 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| | |||||| || | ||||||| | || |||||||| || || Sbjct 19988577 AGGGTGCATCCATCTTACAGCTGCTTCCTAGCAAAGATCAGCCTCTGCTGATCAGGGGGT 19988636 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | || ||||||||||| | | |||||| | | || || Sbjct 19988637 ATACCTTCCTTGTCTTCGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 19988696 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | |||||||| || ||||| || || ||||||||||||||||| Sbjct 19988697 TTGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 19988743 >seq2763 Length=65901067 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| |||| ||||| || || || || || | ||| || || Sbjct 60922704 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 60922645 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || ||| ||||||| | || ||||| || ||||| Sbjct 60922644 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 60922585 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| || ||| |||||| | | || || Sbjct 60922584 ATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 60922525 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||||||||| ||||| Sbjct 60922524 TCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCAT 60922478 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| |||| ||||| || || || || || | ||| || || Sbjct 60922932 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 60922873 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || ||||||| | || ||||| || ||||| Sbjct 60922872 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 60922813 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| || ||| || ||| | | || || Sbjct 60922812 ATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCACC 60922753 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||||||||||||||| Sbjct 60922752 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 60922706 >seq1 Length=114275543 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | ||| || |||||||| | ||| || || || ||| Sbjct 8597709 TCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCC 8597650 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || || || || |||| || | |||||||||||| |||||||| ||||| || Sbjct 8597649 ATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 8597590 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | || || | | | || || |||| ||||| Sbjct 8597589 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACTTCAAGAGTGAT 8597530 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| ||||| ||||| || || |||||||| Sbjct 8597529 AGTTTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 8597494 >seq1230 Length=159902609 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || || | ||||| ||||| || | || || || | ||| ||||| Sbjct 130889236 CCACCTCGCAGACGAAGCACCAGGTGCAGGGTGGCCTCTTTCTGGATGTTGTAATCCGAA 130889177 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||||||||||||||| || |||| || | ||||| || || || Sbjct 130889176 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGATGCTGCTGGTCAGGTGGG 130889117 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | ||||| || ||||| || |||||| | | | ||| Sbjct 130889116 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTTGATGGTGTCACTGGGCTTGACC 130889057 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || || || || || ||||||||||||||||| Sbjct 130889056 TCAAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAGATCTGCAT 130889010 >seq233 Length=141296404 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | ||| || | |||||| | | |||| || || ||| Sbjct 108315098 TCTCAACACAAGATGAAGAGTGGACTGCTTTTGAATGGTATAGTCAGACAAAGTACGTCC 108315039 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || || || || |||| || | ||||||||||||||||||||| ||||| || Sbjct 108315038 ATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCTGGAGGAATTCCTTCCTT 108314979 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | || || | | | ||||| || | ||||| Sbjct 108314978 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGAT 108314919 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| ||||| || || |||||||| Sbjct 108314918 AGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 108314883 >seq3972 Length=29216678 Score = 86.0 bits (94), Expect = 6e-12 Identities = 156/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || || | ||||| ||||| || || || || || | ||| ||||| Sbjct 8003197 CCGCCTCGCAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGAA 8003256 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||||| | ||||||||||||||| || |||| | | | ||||| || || || Sbjct 8003257 AGAGTGTGGCCATCCTCCAGCTGTTTGCCCGCAAATGTCAGGCGCTGCTGGTCAGGTGGG 8003316 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | ||||| || ||||| ||| ||||| | | ||||| Sbjct 8003317 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCGCTGGGCTCGACC 8003376 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| | ||||| | | || || | || ||| ||||||||||||| Sbjct 8003377 TCAAGGGCGATGG-TCTCCCCGTCAAGGTCTTCGCAAAGATCTGCAT 8003422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448248175252080