Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2497 163 4e-36 seq233 158 2e-34 >seq2497 Length=93316391 Score = 163 bits (180), Expect = 4e-36 Identities = 199/269 (74%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| || | | | || ||||| ||||||||||| || || ||||| || || Sbjct 41075792 GCTAAGCGTCACCGTA-AGGTGTTGCGAGACAACATCCAAGGCATTACGAAGCCTGCGAT 41075734 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||||||||| ||||| |||||| | ||||| | |||||||||||| Sbjct 41075733 CCGGCGTCTTGCTCGTCGTGGCGGAGTAAAGCGTATTTCTGGCCTTATCTATGAAGAGAC 41075674 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || |||||| | || | ||| ||| |||| |||||| | || || || Sbjct 41075673 TCGCGGAGTGTTGAAGGTGTTTTTGGAGAACGTGATCCGCGATGCTGTTACTTACACGGA 41075614 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || || |||||||| || |||||||| | || |||||| | || ||||| || Sbjct 41075613 GCATGCCAAGCGCAAGACTGTTACGGCCATGGATGTGGTATATGCACTCAAGCGTCAGGG 41075554 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | || || ||||| | |||| Sbjct 41075553 ACGCACCCTCTACGGCTTTGGCGGCTAAT 41075525 Score = 158 bits (174), Expect = 2e-34 Identities = 193/261 (74%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| || || | | | || ||||| ||||||||||| ||||||||||| || || Sbjct 40932488 GCTAAGCGACACCGTA-AGGTGTTACGAGACAACATCCAAGGCATCACCAAGCCGGCCAT 40932546 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || |||||||||||||||||| |||| || || | || || |||| Sbjct 40932547 CCGGCGCCTAGCCCGGCGTGGTGGAGTCAAGCGTATCTCCGGTCTGATTTACGAGGAGAC 40932606 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | ||| | ||| | ||| ||| |||| || ||| | || || || Sbjct 40932607 TCGTGGGGTGCTCAAGGTGTTCTTGGAGAACGTGATCCGGGACGCTGTAACATACACGGA 40932666 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||||||||| | |||||| |||| || || | ||||| ||||| Sbjct 40932667 GCACGCCAAGCGCAAGACTGTCACAGCGATGGATGTCGTGTACGCCCTTAAACGCCAAGG 40932726 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | ||||| ||||| Sbjct 40932727 ACGCACCCTCTATGGCTTTGG 40932747 Score = 156 bits (172), Expect = 7e-34 Identities = 191/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | | || ||||||||||| || ||||||||||| || || Sbjct 22983984 CGCTAAGCGCCACCGCAAGGTTTTGCGGGATAACATCCAGGGTATCACCAAGCCTGCCAT 22983925 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||||||||| || || |||||| |||| || | ||||||| || | Sbjct 22983924 CCGCCGCCTAGCTCGTCGTGGAGGCGTTAAGCGTATCTCCGGCCTCATCTATGAGGAAAC 22983865 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | || || ||| || || | |||||| | ||| || || Sbjct 22983864 GCGAGGAGTTCTTAAGGTTTTTCTGGAGAATGTGATACGTGATGCCGTGACCTACACGGA 22983805 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| |||||||||||||||||| |||||||| | || || || | || || || || Sbjct 22983804 GCACGCCAAACGTAAGACTGTCACCGCCATGGATGTGGTTTACGCGCTCAAGCGCCAGGG 22983745 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | ||||| ||||| Sbjct 22983744 TCGCACTCTCTATGGCTTTGG 22983724 Score = 149 bits (164), Expect = 1e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||||| | || ||||| |||||||| ||||| |||||||| ||||| Sbjct 41177371 GCTAAGCGTCATCGTAAGGTGCTGCGAGACAACATCCAGGGAATTACCAAGCCTGCTATT 41177312 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| || ||||| || |||||| | ||||| | | |||||||||| | Sbjct 41177311 CGGCGTCTTGCTCGGCGCGGTGGTGTTAAGCGTATTTCTGGCCTTATTTATGAAGAGACT 41177252 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||||| ||| || |||| ||| || || ||||| ||| Sbjct 41177251 CGCGGGGTTCTCAAGGTTTTCCTGGAGAATGTGATCCGTGACGCCGTCACTTATACGGAG 41177192 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || || ||||| || || ||||||| | || ||||| | || ||||| || Sbjct 41177191 CATGCAAAGCGGAAGACGGTGACTGCCATGGACGTGGTGTATGCTCTCAAGCGTCAGGGG 41177132 Query 16673 CG 16674 || Sbjct 41177131 CG 41177130 Score = 145 bits (160), Expect = 1e-30 Identities = 194/270 (72%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||||| | ||| ||||||| ||||| || || |||||||| ||||| Sbjct 41103993 GCTAAGCGTCATCGAAAGGTTCTGAGAGATAATATCCAGGGCATTACCAAGCCTGCTATT 41104052 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| || || || || |||||| | ||||| | ||||||| |||| | Sbjct 41104053 CGGCGCCTGGCTCGGCGAGGCGGCGTTAAGCGTATTTCTGGTCTCATCTATGAGGAGACT 41104112 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||| | || || ||| || || | || || || || |||||| Sbjct 41104113 CGTGGAGTTCTGAAAGTTTTTCTGGAGAATGTGATTCGCGACGCCGTCACTTACACCGAG 41104172 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| || || | ||||| | || ||||| | || || || || Sbjct 41104173 CACGCCAAGCGCAAGACCGTAACAGCTATGGACGTGGTATATGCGCTTAAGCGACAGGGG 41104232 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | ||||||||||| |||| ||| Sbjct 41104233 CGTACCCTCTATGGTTTTGGCGGTTAGTCT 41104262 Score = 143 bits (158), Expect = 4e-30 Identities = 192/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| || ||||||||||| || ||||||||||| || ||| Sbjct 22949694 GCCAAGCGCCACCGCAAGGTTCTGCGCGATAACATCCAGGGCATCACCAAGCCTGCAATC 22949635 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || ||||| ||||| ||||| |||| || | |||| || || | Sbjct 22949634 CGGCGCCTGGCCCGCCGTGGCGGAGTTAAGCGCATCTCAGGCCTCATCTACGAGGAAACC 22949575 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | ||||| ||| ||| |||| || || || ||| || ||| Sbjct 22949574 CGTGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGAG 22949515 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 22949514 CACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGT 22949455 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | ||||| |||||| | ||| Sbjct 22949454 CGCACTCTCTATGGCTTTGGAGGATAA 22949428 Score = 140 bits (154), Expect = 5e-29 Identities = 187/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| || ||||||||||| || ||||||||||| || ||| Sbjct 22941002 GCCAAGCGCCACCGCAAGGTTCTGCGCGATAACATCCAGGGCATCACCAAGCCTGCAATC 22941061 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || ||||| ||||| ||||| |||| || | |||| ||||| | Sbjct 22941062 CGGCGCCTGGCCCGCCGTGGCGGAGTTAAGCGCATCTCCGGCCTCATCTACGAAGAAACC 22941121 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | ||||| ||| ||| |||| || || || ||| || ||| Sbjct 22941122 CGTGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGAG 22941181 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 22941182 CACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGT 22941241 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 22941242 CGCACTCTCTATGGCTTCGG 22941261 Score = 131 bits (144), Expect = 3e-26 Identities = 185/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| || | | | ||||| |||||||| || || || ||||| || || Sbjct 41140316 GCTAAGCGTCACCGTAAGGTTTTGCGAGACAACATCCAGGGCATTACTAAGCCTGCGATT 41140375 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| | |||||||| ||||| || || || | || || | |||||||||||| | Sbjct 41140376 CGGCGTTTAGCTCGTCGCGGTGGTGTTAAACGCATTTCCGGTCTCATCTATGAAGAGACT 41140435 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | || | || || ||| ||| || | ||||||| || ||| || || Sbjct 41140436 CGGGGTGTGCTCAAAGTTTTTCTGGAGAACGTGATTCGTGATGCTGTCACCTACACGGAA 41140495 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| ||||| | ||||| | ||||| ||| | || || || || Sbjct 41140496 CACGCCAAACGCAAGACGGTCACGGCTATGGACGTTGTCTACGCACTCAAGCGCCAGGGT 41140555 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | |||| || ||||| Sbjct 41140556 CGCACTCTTTACGGGTTTGG 41140575 Score = 127 bits (140), Expect = 3e-25 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || |||||||| || ||||| ||||| || ||||| || ||||| || ||||| Sbjct 22463874 TCTGCGGGACAACATCCAGGGCATCACAAAGCCTGCCATCCGGCGCCTGGCCCGCCGTGG 22463933 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||||||||| | || || | | |||||||| | |||| || | ||| | || Sbjct 22463934 CGGAGTCAAGCGCATTTCCGGCCTCATTTATGAAGAAACCCGTGGCGTGCTCAAGGTGTT 22463993 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| |||| || || || ||| || |||||||| || || ||||| || Sbjct 22463994 CCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGAGCACGCAAAGCGCAAGACGGT 22464053 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | ||||| | ||||| || | ||||| || ||||| | | ||||| || || Sbjct 22464054 CACGGCTATGGACGTGGTCTACGCGCTTAAACGGCAGGGCCGAACCCTGTATGGCTTCGG 22464113 Score = 125 bits (138), Expect = 1e-24 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 16463 AACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAG 16522 |||||||| || |||||||| || || ||| | |||||||| || || || | |||||| Sbjct 40998942 AACATCCAGGGCATCACCAAACCCGCAATCTGGCGTCTGGCCCGGCGCGGACGTGTCAAG 40999001 Query 16523 CGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACC 16582 ||||| ||||| | |||| | |||| || | || | ||| | || || ||| | Sbjct 40999002 CGTGTTTCTGGTCTCATCTACGGGGAGACTCAGGGCGTGCTTAAGGTTTTTCTGGAGAAC 40999061 Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATG 16642 ||||| | || ||| || ||| || |||||||| || || ||||| || ||| ||||| Sbjct 40999062 GTTATTCGAGACGCTGTCACCTACACAGAGCACGCAAAGCGCAAGACGGTTACCGCCATG 40999121 Query 16643 GATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | || ||||| | ||||| || | || | ||||||| |||||| | ||| Sbjct 40999122 GATGTGGTTTATGCGCTAAAACGCCAGGCGCGCACCCTTTATGGCTTTGGAGGCTAA 40999178 Score = 120 bits (132), Expect = 5e-23 Identities = 183/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| || || ||||| || || || Sbjct 40938482 CGCCAAGCGCCACCGGAAAGTGCTCCGGGATAACATCCAGGGCATTACCAAACCTGCCAT 40938423 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||| | ||||| || |||||||| | ||||| || ||||||| |||| Sbjct 40938422 TCGGCGCCTGGCGAGACGTGGCGGTGTCAAGCGCATTTCTGGCCTGATCTATGAGGAGAC 40938363 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | || | ||||| ||| || || | || || || ||| || || Sbjct 40938362 GCGCGGGGTCCTTAAAGTTTTCCTGGAGAATGTAATTCGGGACGCCGTCACCTACACGGA 40938303 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || || |||||||| | |||||||| | || |||||||| Sbjct 40938302 GCACGCCAAGCGCAAGACCGTGACAGCCATGGATGTTGTCTATGCCCTCAAGCGTCAAGG 40938243 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 40938242 GCGCACTCTCTACGGTTTCGG 40938222 >seq233 Length=141296404 Score = 158 bits (174), Expect = 2e-34 Identities = 198/269 (74%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| ||||||| | |||| |||| |||||||| || || || ||||| || | Sbjct 109323435 CGCTAAGCGCCATCGCA-AGGTCTTGAGAGACAACATCCAGGGCATTACGAAGCCCGCCA 109323377 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| || || || |||||||| ||||||| | | |||||||||| Sbjct 109323376 TTCGGCGTCTTGCTCGCCGCGGAGGCGTCAAGCGGATCTCTGGCCTCATTTATGAAGAGA 109323317 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | ||| ||||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 109323316 CTCGGGGTGTGCTGAAGGTGTTCCTGGAGAACGTCATCCGGGACGCGGTCACCTACACGG 109323257 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||||||||| ||||||| | || || || | ||||| || | Sbjct 109323256 AGCACGCCAAGCGCAAGACTGTCACTGCCATGGACGTGGTGTACGCCCTTAAACGCCAGG 109323197 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | || | | |||||||| ||| | ||| Sbjct 109323196 GGCGCACCCTGTATGGTTTCGGAGGCTAA 109323168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068179950854