Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq3640 268 1e-66 seq1230 102 9e-17 seq1231 86.0 7e-12 seq947 82.4 8e-11 >seq3640 Length=31815103 Score = 268 bits (296), Expect = 1e-66 Identities = 630/945 (67%), Gaps = 14/945 (1%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || ||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 24467944 TTCATTTAGAAGCCAGCATCCAAGGTAAAAGAATTCTCTATTGGACTTGACATCACTCCC 24468003 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 ||| | ||||| || | ||||| || || || || || ||||||||||||| || ||| Sbjct 24468004 ATTCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGCAATA 24468063 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||||| |||||||||||||| | | || | || || |||||||||| | Sbjct 24468064 TTCTCCATAAAGTCAAATGGATTTTCTACTCTGAACACCTTGCTAAAACCCAGTTC-CAG 24468122 Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| ||| || || |||||||| || || || |||||| |||||||| || || Sbjct 24468123 CATAAGTCTGTCAGCCACAAATTCAATGTACTGCTTCATTAACATGCAATTCATCCCAAT 24468182 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 | || ||||| | || | || | || | | ||| || || | | ||| Sbjct 24468183 GAGCTTCACAGGCAAGGCGTCAGTGAGGAACTCCTCCTGTATCCTAACAGCATTGATAAT 24468242 Query 21421 TATATTTATTATCCTAGATG-TACTA-GGGGGATACAATAATTGTTTAAACATCAAACAT 21478 ||||| || | || || | | | || || | | ||||| ||||||| || Sbjct 24468243 --TATTTCTTTTACTCTCTGCTCCGACGGTTTATGTACCAGGTGTTTGAACATCAGGCAG 24468300 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||| ||||| || ||||| ||||| || || || | |||||| |||||||| | || Sbjct 24468301 GCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCA 24468360 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATG 21598 ||||| | ||||| || || | ||| |||||||| ||||| | || |||||||| ||| Sbjct 24468361 GGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATG 24468420 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATC 21658 || || || |||||||| || || | ||||| || || |||| ||||| ||| ||| Sbjct 24468421 CCTTCCACTGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATC 24468480 Query 21659 CATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAA 21718 | ||||| | |||||| | || | |||| || || | ||| || || || Sbjct 24468481 TAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTAAATGGCATTGAAG 24468540 Query 21719 AGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCA 21778 |||| | |||| | ||| | ||| ||||||||||||| Sbjct 24468541 AGATATTCCCTTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCA 24468600 Query 21779 GAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGA 21838 ||||| || ||||| || || || || || || || ||||| | ||||||| | ||| Sbjct 24468601 GAATGCATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCCTCTGTAATCTGA 24468660 Query 21839 ACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAA 21898 || || |||||| | ||||||||||||||||||| |||||||| || ||||| Sbjct 24468661 ACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTAGCTGCAAAG 24468720 Query 21899 AATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTG--TTAATTTTTTCCAA--TC 21954 || |||| | || ||| |||||| ||| | ||| | || | |||| | | Sbjct 24468721 AAAGCCAGAACATGCGATATGAAATAT--TTC-TCATCAGGCTTCAGAGCTTCCCAGTGC 24468777 Query 21955 TAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTT 22014 | | | || || || | ||| || || | | ||||||||| ||| ||| || || Sbjct 24468778 TGA-ATGTCCTTGGAAAGATCCACCTCCTTGGCCGTCCAAAAGGAAGCCTCAGCTTTCTT 24468836 Query 22015 ATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 |||||| ||| ||||||| ||| || ||||| || |||| Sbjct 24468837 ATACATTTGCCAAATATCATGGTATTCGATAGGAAAGATAGCAAA 24468881 >seq1230 Length=159902609 Score = 102 bits (112), Expect = 9e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 150442372 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 150442431 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 ||| | ||||| || | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 150442432 ATTCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 150442491 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||||||||| Sbjct 150442492 TTCTCCATAAAGTCAAATGGATTTTC 150442517 >seq1231 Length=116334831 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| |||||||| ||| || ||||| | | | Sbjct 53047830 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCCGTGGTTTCTGCCATAACTGCAAAAC 53047889 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 || || || ||||| ||| || || |||||||| ||||||| || || || || Sbjct 53047890 GCTGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTGTAAAGAAATGTTTT 53047949 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 53047950 CCATAAAATCAAAGGGATTTTC 53047971 >seq947 Length=108171978 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 |||||||| ||||||| | | |||| ||| | || || | ||| || || | Sbjct 101258672 AGTTCTTCCGGAGTTTCAAAGTGAGCAAGGTGGGCTTCTAAGGAGGCACAGAAAGTTTGA 101258731 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| ||| ||||||||||||||||| |||||| ||||||||||||| Sbjct 101258732 CTGAATGTCCAATTCCTTGTGTCTTCAGAAAAGTAAAAACATTTACTTCCAAATCCAATC 101258791 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 || | | ||||| | | |||| Sbjct 101258792 CAGCTTTCCGGGCAGGCAGCATA 101258814 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 |||||||| |||| || | | |||| ||| | || || ||||| || || | Sbjct 101402379 AGTTCTTCCGGAGTTTGAAACTGAGCAAGGTGGGCTTCTAACGAGGTACAGAAAGTTTGA 101402438 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | |||||||||||| | | ||||||||||||||||| |||||| ||||||||||||| Sbjct 101402439 CTGAATGTCCAATTTCTCGTGTCTTCAGAAAAGTAAAAACATTTACTTCCAAATCCAATC 101402498 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 || | | ||||| | | |||| Sbjct 101402499 CAGCTTTCCGGGCAGGCAGCATA 101402521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531849750820720