Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3640 450 2e-121 seq1230 129 7e-25 seq702 122 1e-22 seq1231 116 5e-21 seq4546 87.8 2e-12 >seq3640 Length=31815103 Score = 450 bits (498), Expect = 2e-121 Identities = 661/934 (71%), Gaps = 6/934 (1%) Strand=Plus/Plus Query 32957 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 33013 |||| ||| || |||| || | |||| ||| ||| | || ||||| ||||||||| Sbjct 24467948 TTTAGAAGCCAGCATCCAAGGTAAAAGAATTCTCTATTGGACTTGACATCACTCCCATTC 24468007 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 | || ||||| || || | || || || || ||||| |||||||||| || ||||| | Sbjct 24468008 TCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGCAATATTCT 24468067 Query 33074 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 33133 |||| || ||||| ||||| || | | | || |||| |||| ||| || | Sbjct 24468068 CCATAAAGTCAAATGGATTTTCTACTCTGAACACCTTGCTAAAACCCAGTTCCAGCATAA 24468127 Query 33134 ATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 33193 ||| || || || ||||| || || ||||| | |||||||| || || || | Sbjct 24468128 GTCTGTCAGCCACAAATTCAATGTACTGCTTCATTAACATGCAATTCATCCCAATGAGCT 24468187 Query 33194 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 33253 | || || | || |||| || || || | | || || |||| | || || Sbjct 24468188 TCACAGGCAAGGCGTCAGTGAGGAACTCCTCCTGTATCCTAACAGCATTGATAATTATTT 24468247 Query 33254 ATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAAT 33313 | | || | | || |||| ||| | | ||||| ||||||| || || || | Sbjct 24468248 CTTTTACTCTCTGCTCCGACGGTTTATGTACCAGGTGTTTGAACATCAGGCAGGCAAAGT 24468307 Query 33314 CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTA 33373 | ||||| | |||||| ||||| ||||| ||||| |||||||| ||||| || ||||| | Sbjct 24468308 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCA 24468367 Query 33374 GGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTA 33433 | || || || || ||||| ||||| || || || || |||||||||||||| ||||| | Sbjct 24468368 GTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCA 24468427 Query 33434 CTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTT 33490 ||||||||||||| | || | |||||||| | | | |||| ||| | Sbjct 24468428 CTGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCTAACGCA 24468487 Query 33491 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33550 |||||||| |||||||| || |||||||||||||||| |||||||| |||||||| | Sbjct 24468488 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTAAATGGCATTGAAGAGATATT 24468547 Query 33551 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 33610 |||| || |||||||| |||||||| || | |||||||||||||| ||||| | Sbjct 24468548 CCCTTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGCA 24468607 Query 33611 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTG 33670 ||||||| ||||| || || || || |||||||| | |||||| |||||||| |||||| Sbjct 24468608 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCCTCTGTAATCTGAACTTCTT 24468667 Query 33671 TACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33730 | |||||| ||| |||| |||||||| ||||| || ||||| |||||||| || |||| Sbjct 24468668 GGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTAGCTGCAAAGAAAGCCA 24468727 Query 33731 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTT 33790 ||||| ||| |||||||| || || || | || | ||| | | || || | Sbjct 24468728 GAACATGCGATATGAAATATTTCTCATCAGGCTTCAGAGCTTCCCAGTGCTGAATGTCCT 24468787 Query 33791 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCC 33850 | || | ||| || || | | |||||||| || ||||| || || |||||||| | || Sbjct 24468788 TGGAAAGATCCACCTCCTTGGCCGTCCAAAAGGAAGCCTCAGCTTTCTTATACATTTGCC 24468847 Query 33851 AGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 | || |||| |||| ||| || || ||| |||| Sbjct 24468848 AAATATCATGGTATTCGATAGGAAAGATAGCAAA 24468881 >seq1230 Length=159902609 Score = 129 bits (142), Expect = 7e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| |||||||| ||||| |||||||| || || || || | Sbjct 150440333 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 150440392 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||| ||||| ||||||||||||| Sbjct 150440393 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 150440452 Query 33446 C 33446 | Sbjct 150440453 C 150440453 Score = 109 bits (120), Expect = 7e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 ||||||| |||||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 150438694 TCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 150438753 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 || || || || |||||||| | ||| || |||||||| |||||| | |||||| ||| Sbjct 150438754 ATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCC 150438813 Query 33685 GCC 33687 || Sbjct 150438814 ACC 150438816 Score = 107 bits (118), Expect = 2e-18 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| ||| ||| ||| |||||||| || || || || | Sbjct 150431939 CCTCATCTCTGCTAATAAGTTCATTG--AAATGTGGAGCCGGGCATCAGTCCTCGTTTCT 150431996 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||| ||||| ||||||||||||| Sbjct 150431997 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 150432056 Query 33446 C 33446 | Sbjct 150432057 C 150432057 >seq702 Length=116768492 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| ||||| ||||| || ||||| || ||||| | Sbjct 56442963 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 56443022 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 56443023 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGAGCAATAAGTAAA 56443082 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 56443083 CTGTTTCTTATACCATA 56443099 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 56440509 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 56440568 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 56440569 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 56440628 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 56440629 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 56440679 Score = 109 bits (120), Expect = 7e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || ||||| |||| | Sbjct 56453961 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACG 56454020 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || |||||||| ||||| || | ||| |||||| | | || || |||||||| Sbjct 56454021 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCA 56454080 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 56454081 AGGCTCCAGGTAGATAGC 56454098 >seq1231 Length=116334831 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| || Sbjct 53055245 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 53055304 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 53055305 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 53055363 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 ||||||||||||| || ||||| ||||||||||| ||||| || || | || |||| Sbjct 53060402 CCAAATTTTCATTTACAATTCCATCACTGGCTGCGAAAAAGGCTAAGATGTGAGAGATAA 53060461 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33796 |||| || || |||| | | ||||||||||| | | || ||| || |||| Sbjct 53060462 AATACTTCTCATCTGATTTAAGTTTATTCCAGTGAGGGAGATCCTTTGATA 53060512 >seq4546 Length=144923918 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 31047 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCT 31104 ||| || || ||||| ||| ||| ||||| | ||| ||| | | ||| |||||| Sbjct 18169683 TCCAGTAGAACCAAAACCTCCTGAACTCCTGTCAGTGTC--ATCCAAAACTTGAACTTCT 18169740 Query 31105 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31164 || |||||||||| | || |||| | | || ||||| || || | ||| || | || Sbjct 18169741 TCTGTTTCTGGATAAAAAATCCGTTCACAAATGAGCTGCGCAATCCGATCACCTTTTTTG 18169800 Query 31165 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31224 || | |||| | ||| ||| |||| || | || || | ||||| ||||||||| Sbjct 18169801 ACTTCAAACTTCTCTTTGCCAAAATTAGACAGCACAACACCAACATTTCCTCTATAATCT 18169860 Query 31225 TCGTCTATTACACCGCCTCCTATATCAAT 31253 || ||||| ||||| |||||||||| || Sbjct 18169861 TCATCTATGACACCAGCTCCTATATCTAT 18169889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622887412642480