Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1230 127 5e-24 seq3640 118 3e-21 seq702 100 7e-16 >seq1230 Length=159902609 Score = 127 bits (140), Expect = 5e-24 Identities = 404/621 (65%), Gaps = 24/621 (4%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATAT----TGGAAGGGAATTGTCGAAGAACTTCT 111370 ||||| || || ||||| || |||| | |||||||| || | || || | || Sbjct 40601895 TTTCCTCTGCTGACAACCAA----ACATGTGTTCTGGAAGGGTGTTTTGGAGGAGTTGCT 40601950 Query 111371 GTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTG 111430 ||||||||| ||| ||||| || || ||||| | | || || || || || Sbjct 40601951 GTGGTTTATCAAGGGATCCACAAACGCTAAAGAACTGTCTTCGAAGGGAGTGAAGATCTG 40602010 Query 111431 GGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGA-CAACGAAGAAG 111489 ||||| |||||||| || |||||||| || | ||| || || | || | ||||| Sbjct 40602011 GGATGCCAATGGATCCCGAGACTTTCTGGA-TGGCCTGGGATTCTCTACCAGAGGAGAAG 40602069 Query 111490 GTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCA 111549 | || | || |||||||| || || || ||| | || ||||| || || |||||| | Sbjct 40602070 GGGACTTGGGCCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCCGAATACAAAGATA 40602129 Query 111550 TGCACGACTCATATGATTCA---CAGGGAACTGATCAATTACAGAATGTCATTGATCAAA 111606 || || ||| || ||||| || ||| ||| ||| | || || || || ||| | Sbjct 40602130 TG---GATTCAGATTATTCAGGTCAAGGAGTTGACCAACTGCAAAAAGTGATCGATACCA 40602186 Query 111607 TTAAGAACAACCCAACTTCTCGTC----GCATTATTATGAGTGCATGGAACCCAAATGCA 111662 | || |||||| | | || | | || || ||| |||| ||||| ||||| | Sbjct 40602187 TCAA----AACCCACCCTGACGACAGAAGAATCATCATGTGTGCTTGGAATCCAAAAGAT 40602242 Query 111663 TTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGG 111722 | ||||| || || || ||||| | | |||||||| || || ||||| Sbjct 40602243 CTCCCTCTGATGGCGCTGCCCCCGTGTCACGTCCTCTGCCAGTTCTACGTGGTGGACGGC 40602302 Query 111723 ATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAAT 111782 ||| || ||||| |||| ||||| || | || || || || || | || || || Sbjct 40602303 GAGCTGTCCTGCCAGCTGTACCAGCGGTCGGGAGACATGGGCCTGGGCATGCCATTCAAC 40602362 Query 111783 ATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGT 111842 || || || ||||| || || || | | | ||||| || | || ||||| || ||| Sbjct 40602363 ATCGCCAGCTACGCCCTGCTCACGTACATGATCGCGCACATCACCCGGCTCAAGCCAGGT 40602422 Query 111843 GAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAA 111902 || || |||| | | |||||||| || ||||| || ||||| || | || || Sbjct 40602423 GACTTTGTTCATACTTTGGGAGATGCACACATTTACCTGAATCACATCGAGCCGCTGAAG 40602482 Query 111903 ACACAGTTGAAGCGCAAACCA 111923 | ||| | |||| ||||| Sbjct 40602483 ATTCAGCTTCAGCGAGAACCA 40602503 Score = 91.5 bits (100), Expect = 4e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 ||||| || | || ||||||| || |||||||| ||||||||||| | ||| || Sbjct 150440465 GAACGGGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCA 150440406 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| || || || ||||| ||||| | ||| Sbjct 150440405 ATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATT 150440346 Query 22609 AGCCGAGATGAGG 22621 ||| ||||||||| Sbjct 150440345 AGCAGAGATGAGG 150440333 >seq3640 Length=31815103 Score = 118 bits (130), Expect = 3e-21 Identities = 334/505 (66%), Gaps = 10/505 (2%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||||||||| || | ||| | |||| || | | | | ||| Sbjct 24468509 AAGAAGAAGGCAGATTGGGCCTTGCGTTAGATTGGGGACAAAGAGGCTACCTATGGAGAA 24468450 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 ||| || | || ||||||| || |||||||| ||||||||||| | ||| |||| Sbjct 24468449 CGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCAATA 24468390 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || ||||| | | | ||||| || || || ||||| ||||| | |||||| Sbjct 24468389 TTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGC 24468330 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671 ||||||||||| | || || ||||| || || | | || || || | | ||| Sbjct 24468329 AGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGT-TC--AAACACCTGGTACAT 24468273 Query 22672 AAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTA 22731 |||| | | | | ||| || || |||| ||||| ||| | | | | | Sbjct 24468272 AAACCGTCGGAGCAGAGAGTAAAAGAAATAATTATCAATGCTGTT-AGGATACAGGAGGA 24468214 Query 22732 TTTATTTGC-GAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTAC 22790 || | | || || || || || | |||||||| || ||| | | ||||| Sbjct 24468213 GTTCCTCACTGACGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCATGTTAATGAAGCA 24468154 Query 22791 ATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTAT-GCAAAGCATTATA 22849 || ||| ||||||| || || | || | | ||| |||| | |||| | || | Sbjct 24468153 GTACATTGAATTTGTGGCTGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGTGTT-CA 24468095 Query 22850 ACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCT 22909 || | ||||||||||| | ||||| |||| |||| ||||||||||| || |||| Sbjct 24468094 GAGTAGAAAATCCATTTGACTTTATGGAGAATATTGCACTGGAAGGAAAGACTAACTTCT 24468035 Query 22910 TCGAAAAAAGAGTTGGTGAATACCA 22934 | || || ||||| || ||||| || Sbjct 24468034 TTGAGAAGAGAGTAGGCGAATATCA 24468010 >seq702 Length=116768492 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| ||||||||||| || || ||| Sbjct 56452723 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGAACCCCATACATG 56452664 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | || || ||||| || || || ||| |||||||||| |||| || || || | Sbjct 56452663 CTCTATAAGGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAATGC 56452604 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 ||||||||||| || || || | ||||| ||| Sbjct 56452603 AGCAACCTATGCACAGAAATAGTGGAATATACC 56452571 Score = 86.0 bits (94), Expect = 2e-11 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 364952 AGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTT 365011 ||| ||| |||| | |||| || || ||||||| |||| ||||| ||||||||||| | Sbjct 56440694 AGAGCATACCAGAAATTCCTGATGACCTGAAGCAACTTTATAAAACTGTATGGGAAATCT 56440635 Query 365012 CCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGT 365071 | | |||| | | | ||||| ||||| | |||||||| || ||| ||||||| Sbjct 56440634 CTCAGAAAACTGTTCTCAAGATGGCAGCCGAGAGAGGTGCTTTCATTGATCAAAGCCAGT 56440575 Query 365072 CGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACG 365131 | || ||| | || || |||| | || | ||| || || ||||| ||||||| Sbjct 56440574 CTTTGAACATCCATATTGCTGAGCCTAACTATGGCAAACTCACTAGTATGCACTTCTACG 56440515 Query 365132 GGTGGAA 365138 | ||||| Sbjct 56440514 GCTGGAA 56440508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303225383404196