Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 5e-12 seq2763 84.2 2e-11 seq233 82.4 7e-11 >seq1 Length=114275543 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || |||||||| | || |||||| | || || | ||||| || | Sbjct 8597490 CAAGATGCAGATTTTCGTAAAAACCCTTACAGGAAAAACTATCACTCTTGAAGTTGAACC 8597549 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | || || || || | || || ||||| || || ||||| || ||||| || Sbjct 8597550 CTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 8597609 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| || |||||||||| | ||||||||||| ||||||| | | | || || Sbjct 8597610 TCAGCAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGACTA 8597669 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 ||||||||||| || || || ||||| | ||||| ||| Sbjct 8597670 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGA 8597709 >seq2763 Length=65901067 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 |||||||||| | ||||| || || | || || || | || ||| | || || ||| | Sbjct 60922474 CAAAATGCAAATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCC 60922533 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||||||| | || || ||||| || || ||||| || ||||| || Sbjct 60922534 CAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCTCCTGA 60922593 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 || ||||| || || | | ||||||||| || ||||||| Sbjct 60922594 CCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATG 60922634 >seq233 Length=141296404 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || |||||||| | || ||||| | || || |||| ||||| | Sbjct 108314879 CAAGATGCAGATTTTCGTAAAAACCCTTACAGGAAAGACTATCACTCTCGAGGTCGAACC 108314938 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | || || || || | || || ||||| || || ||||| || ||||| || Sbjct 108314939 CTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGA 108314998 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| || |||||||||| | ||||||||||| ||||||| | | | || || Sbjct 108314999 TCAGCAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGACTA 108315058 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 || ||||||||| | || || ||||| | ||||| ||| Sbjct 108315059 TACCATTCAAAAGCAGTCCACTCTTCATCTTGTGTTGAGA 108315098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429895768470090