Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq233 95.1 1e-14 seq2763 93.3 4e-14 >seq1 Length=114275543 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| || ||||| || || |||||||| || || | ||| || || Sbjct 8597491 AAGATGCAGATTTTCGTAAAAACCCTTACAGGAAAAACTATCACTCTTGAAGTTGAACCC 8597550 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 8597551 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 8597610 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| |||| ||| ||||| ||| ||||||||| || || | || || Sbjct 8597611 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGACTAC 8597670 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| ||||| ||| | ||| | ||||||||| | || || || Sbjct 8597671 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 8597720 >seq233 Length=141296404 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| || ||||| || || ||||| || || || | || || || Sbjct 109921895 AAGATGCAGATTTTCGTAAAAACCCTTACAGGAAAGACTATCACTCTGGAGGTCGAACCC 109921836 Query 115343 AGCGACACTGTTGGACAAGTAAAA--CAAAAAATTGCC--GATAAAGAAGGCGTCCCCGT 115398 || || | | | | ||||| ||| | | ||| ||||||||||| | || Sbjct 109921835 TCGGATACAATAGAAAATGTAAAGGCCAAGATAAGGCCAGGATAAAGAAGGAATTCCTCC 109921776 Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 ||||||||||||||| |||| ||| ||||| ||| ||||||||| || || | || Sbjct 109921775 TGATCAGCAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGA 109921716 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 || |||||||| || ||||| ||| | ||| | ||||||||| Sbjct 109921715 CTACAACATTCAGAAGGAGTCCACTCTTCATCTTGTGTTGAGA 109921673 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| || ||||| || || ||||| || || || |||| || || Sbjct 108314880 AAGATGCAGATTTTCGTAAAAACCCTTACAGGAAAGACTATCACTCTCGAGGTCGAACCC 108314939 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || ||| Sbjct 108314940 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGAT 108314999 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| |||| ||| ||||| ||| ||||||||| || || | || ||| Sbjct 108315000 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGACTAT 108315059 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 | ||||||||| |||| ||| | ||| | ||||||||| Sbjct 108315060 ACCATTCAAAAGCAGTCCACTCTTCATCTTGTGTTGAGA 108315098 >seq2763 Length=65901067 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| | || ||||||||||||||| |||| ||| ||||| ||| ||||| Sbjct 824362 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATTTTTGCTGGCAAGCAACTAGAA 824303 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| || || | || || ||||||||||| ||||| ||| | ||| | |||||| Sbjct 824302 GATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTG 824243 Query 115499 AGATTGCGAGGAGG 115512 ||| | || || || Sbjct 824242 AGACTTCGTGGTGG 824229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425304198169360