Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3640 102 7e-17 seq2763 96.9 3e-15 seq3972 84.2 2e-11 seq1230 84.2 2e-11 >seq3640 Length=31815103 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 12/220 (5%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| |||||||| || || ||||||||||| | | ||| ||||| Sbjct 21636568 CAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGT----GCGTC 21636513 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | |||| || || || ||| | || |||| ||| || || ||| | ||| || | Sbjct 21636512 CATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCT 21636453 Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 |||| || ||||| ||| || | | | ||||||| ||||||| || | ||| Sbjct 21636452 TGTCTTGGATCTTTGC--CTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGGGT 21636395 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||||| || |||||||| || || ||||| ||||||||| Sbjct 21636394 GATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATT 21636355 >seq2763 Length=65901067 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| || ||||| || || ||||||||||| | | || | | || Sbjct 60922690 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 60922631 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| ||| | || || || || Sbjct 60922630 TTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATC 60922571 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | ||||||| |||| ||||||| Sbjct 60922570 CTGGATCTTGGC--CTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATG 60922513 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || |||||||| || || ||||| || ||||||||| Sbjct 60922512 GTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTTG 60922474 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| || ||||| || || ||||||||||| | Sbjct 60922932 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 60922873 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| || ||||| ||| | || |||| ||| ||||| ||| Sbjct 60922872 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 60922813 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || || || || || || |||||| | | | || || | ||||||| Sbjct 60922812 ATCCCTTCCTTATCCTGGATCTTGGC--CTTCACATTCTCGATGGTATCACTGGGCTCCA 60922755 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || |||||||| || || ||||| |||||||| Sbjct 60922754 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 60922706 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || ||||| || || ||||||||||| | | || | | || Sbjct 60923145 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 60923086 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || |||| ||| ||||| ||| | || || || || Sbjct 60923085 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCC 60923026 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | || || | ||||||| |||| |||||||| Sbjct 60923025 TGGATCTTGGC--CTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAAGGTGATGG 60922968 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| || ||||| ||||||||||| Sbjct 60922967 TCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 60922934 >seq3972 Length=29216678 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || |||| ||||| |||||||| || || |||||||| || | Sbjct 8003197 CCGCCTCGCAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGAA 8003256 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | | ||||||| |||||||||||| | | || ||||| ||||| || Sbjct 8003257 AGAGTGTGGCCATCCTCCAGCTGTTTGCCCGCAAATGTCAGGCGCTGCTGGTCAGGTGGG 8003316 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || ||| || || | | | ||||||| |||||| Sbjct 8003317 ATGCCCTCCTTGTCTTGGATTTTGGCT--TTGACATTCTCGATGGTGTCGCTGGGCTCGA 8003374 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | || ||||| | | || |||| || || |||| |||||||| Sbjct 8003375 CCTCAAGGGCGATGG-TCTCCCCGTCAAGGTCTTCGCAAAGATCTGCAT 8003422 >seq1230 Length=159902609 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || |||| ||||| |||| ||| || || |||||||| || | Sbjct 130889236 CCACCTCGCAGACGAAGCACCAGGTGCAGGGTGGCCTCTTTCTGGATGTTGTAATCCGAA 130889177 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| |||||||||||| | || || |||| ||||| || Sbjct 130889176 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGATGCTGCTGGTCAGGTGGG 130889117 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || ||| || || | | ||||| | ||||| Sbjct 130889116 ATGCCCTCCTTGTCTTGGATTTTGGCT--TTGACATTCTTGATGGTGTCACTGGGCTTGA 130889059 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || || ||||| |||||||| Sbjct 130889058 CCTCAAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAGATCTGCAT 130889010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405050093637220