Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2763 120 3e-22 seq3641 95.1 1e-14 seq1230 91.5 1e-13 seq3972 87.8 2e-12 >seq2763 Length=65901067 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| ||||||| || ||||||| | || |||||| | Sbjct 60922477 AATGCAAATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAG 60922536 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| |||||| ||||| || ||| || || |||||||| || |||||||| Sbjct 60922537 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCTCCTGACCA 60922596 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || | ||||||| |||||| | || ||||| Sbjct 60922597 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAA 60922656 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 60922657 CATCCAGAAAGAGTCGACCCTGCA 60922680 >seq3641 Length=30143674 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/230 (70%), Gaps = 10/230 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || | ||||||| | || || ||| | | Sbjct 24919680 ATGCAGATCTTTGTGAAGACCCTGACGGGGA---CCATCACCCTTGAGGTCGAGCCCAGT 24919736 Query 25059 GACACTATC-GA--GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || |||| |||| |||| || ||||| || || || ||||||||| Sbjct 24919737 GACACCATGAGAATGTCA---AAGCCAAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 24919792 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || |||| |||||||| | || |||| |||||| | |||||| Sbjct 24919793 CAGCAGCGTCTGATATTTGGGGGCAAACAGCTGGAGGATGGCCGCACTCTTTCGGATTAC 24919852 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||| ||||| || || | ||||| | || ||||| || Sbjct 24919853 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTTCGTCTGAGAGGTGG 24919902 >seq1230 Length=159902609 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || || || | | Sbjct 130889010 ATGCAGATCTTTGTGAAGACCCTGACGGGGAAGACCATCACCCTTGAGGTCAAGCCCAGT 130889069 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||| || | || |||| |||| || ||||| || || || ||||||||| Sbjct 130889070 GACACCATCAAG--AATGTCAAAGCCAAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 130889126 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || |||| | || ||||| |||||||| | || |||| |||||| | |||||| Sbjct 130889127 CAGCAGCATCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTTTCGGATTAC 130889186 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| |||| || || | ||||| Sbjct 130889187 AACATCCAGAAAGAGGCCACCCTGCACCTGGTGCT 130889221 >seq3972 Length=29216678 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/215 (70%), Gaps = 7/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||| ||||| ||||| || | | ||||| | | || || ||| | Sbjct 8003422 ATGCAGATCTTTGCGAAGACCTTGACGGGGAGA-CCATCGCCCTTGAGGTCGAGCCCAGC 8003364 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| | || |||| |||| || ||||| || || || ||||||||| Sbjct 8003363 GACACCATCGAG--AATGTCAAAGCCAAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 8003307 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | | ||||| |||||||| | || |||| | |||| | |||||| Sbjct 8003306 CAGCAGCGCCTGACATTTGCGGGCAAACAGCTGGAGGATGGCCACACTCTTTCGGATTAC 8003247 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| ||||| || || | ||||| Sbjct 8003246 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 8003212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433287451061570