Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3640 356 3e-93 seq1230 105 7e-18 >seq3640 Length=31815103 Score = 356 bits (394), Expect = 3e-93 Identities = 552/778 (71%), Gaps = 9/778 (1%) Strand=Plus/Plus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| ||| ||||| |||||||| |||||||| ||| || |||||||| || | Sbjct 24468124 ATAAGTCTGTCAGCCACAAATTCAATGTACTGCTTCATTAACATGCAATTCATCCCAATG 24468183 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| | ||||| || | ||| || | || || ||| || | | | Sbjct 24468184 AGCTTCACAGGCAAGGCGTCAGTGAGGAACTCCTCCTGTATCCTAACAGCATTGATAATT 24468243 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| ||||||| | | ||||| ||||| | | ||| |||| | ||| ||| Sbjct 24468244 ATTTCTTTTACTCTCTGCTCCGACGGTTTATGTACCAGGTGTTTGAACATCAGGCAGGCA 24468303 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156 ||||| |||||||| || |||| || || || | ||||| ||||| | || || Sbjct 24468304 AAGTCACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAATGTGAGGCCAGG 24468362 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | ||||||||||||||||||||| |||||||| |||||| ||||||||| || || || Sbjct 24468363 CATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCC 24468422 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 |||||| || ||||| || |||| |||||| || | | || || | ||| | Sbjct 24468423 TTCCACTGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCTA 24468482 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || |||||||| || || ||||| | |||||| | |||| || || || || || Sbjct 24468483 ACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTAAATGGCATTGAAGAG 24468542 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 || || | || | |||||| ||||| ||||| || | ||| |||||||||||| Sbjct 24468543 ATATTCCCTTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGA 24468602 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||| | || ||||| ||||||||||| || |||||||| | ||| || || ||||| || Sbjct 24468603 ATGCATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCCTCTGTAATCTGAAC 24468662 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 |||||| ||||| ||| || | |||||||| ||||| ||||| |||||||| || Sbjct 24468663 TTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTAGCTGCAAAGAA 24468722 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCA-TCTTTA-AGCTTATCCCAAT-CGGA 93573 ||||| | |||| ||| |||| |||||||||| ||| | |||| ||||| | | || Sbjct 24468723 AGCCAGAACATGCGATATGAAATATTTCTCATCAGGCTTCAGAGCT--TCCCAGTGCTGA 24468780 Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 | || || |||||||| || || | | | |||||||| || || || ||||| || || Sbjct 24468781 -ATGTCCTTGGAAAGATCCACCTCCTTGGCCGTCCAAAAGGAAGCCTCAGCTTTCTTATA 24468839 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCT 93691 ||| | ||| || || || |||| || ||||| || |||| || | ||||| ||| Sbjct 24468840 CATTTGCCAAATATCATGGTATTCGATAGGAAAGATAGCAAAGCGGTGGGGGTTTTCT 24468897 >seq1230 Length=159902609 Score = 105 bits (116), Expect = 7e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | ||||||||||||||||||||| |||||||| ||| Sbjct 150440353 TCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCA 150440412 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || |||||||| || ||||| || |||| ||||| Sbjct 150440413 AAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACCCGTTC 150440465 Score = 102 bits (112), Expect = 9e-17 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 ||||| | || || | ||||||||||||||||||||| |||||||| |||||| |||| Sbjct 150431966 AATGTGGAGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCA 150432025 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||||| || || |||||||| || ||||| || |||| ||||| Sbjct 150432026 GAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACCCGTTC 150432069 Score = 102 bits (112), Expect = 9e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| ||||| || | ||| ||||||||||||||| | || ||||| ||||||||| Sbjct 150438700 ATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 150438759 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 || || |||||||| | |||||| || ||||| |||||||| ||||| ||| || Sbjct 150438760 AAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCAC 150438815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556807355284720