Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq233 113 4e-20 seq2763 100 2e-16 seq3640 95.1 1e-14 seq520 89.7 4e-13 >seq1 Length=114275543 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | || || || |||||||||||||| || Sbjct 8597721 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 8597662 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| | || || | || || || ||||| Sbjct 8597661 CAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 8597602 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || ||| || Sbjct 8597601 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 8597542 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||||| || || || |||||||| ||||||||||| Sbjct 8597541 TTCAAGAGTGATAGTTTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 8597494 >seq233 Length=141296404 Score = 113 bits (124), Expect = 4e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| |||| |||||||| || | ||| | || || || || ||||||||||| || Sbjct 109921660 TACCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAG 109921719 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 || |||||| |||||| ||||| || ||||| | || || | || || || |||| Sbjct 109921720 ACAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAG 109921779 Query 114274 GAATGCCTTCTTTGTC--GGC--AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGAT 114329 |||| |||||||| || ||| ||||| |||| | ||| | || || | || | Sbjct 109921780 GAATTCCTTCTTTATCCTGGCCTTATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGT 109921839 Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| |||| || | || || || || || |||||||| ||||||||||| Sbjct 109921840 TCGACCTCCAGAGTGATAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 109921892 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| |||| |||||||| || | ||| | || || | ||||||||| | || || Sbjct 108315111 TACCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTGCTTTTGAATGGTATAGTCAG 108315052 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 || |||||| |||||| ||||| || ||||| | || || | || || || |||| Sbjct 108315051 ACAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCTGGAG 108314992 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||| ||||| || || ||||| |||| | ||| | || || | || ||||| Sbjct 108314991 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGA 108314932 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | || | || || || || || |||||||| ||||||||||| Sbjct 108314931 CCTCGAGAGTGATAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 108314883 >seq2763 Length=65901067 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | || || || |||||||||||||| || Sbjct 824228 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 824287 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| | || || | || || || ||||| Sbjct 824288 CAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 824347 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || ||| || Sbjct 824348 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 824407 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | | | || || || || | |||||||| ||||||||||| Sbjct 824408 CTCGAGAGGGATAGTCTTTCCTGTACGGGTTTTTACGAAAATCTGCAT 824455 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || | ||| || |||||| || || || || Sbjct 60923130 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 60923071 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| ||||| || ||||| || || ||||| || Sbjct 60923070 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGGATCTTGGCCTTC 60923011 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || ||| || || |||| ||| | || ||||||||||| || Sbjct 60923010 ACATTCTCAATGGTATCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTC 60922951 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 60922950 TTGACGAAAATCTGCAT 60922934 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || | ||| || |||||| || || || || Sbjct 60922674 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 60922615 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| ||||| || ||||| || || ||||| || Sbjct 60922614 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGGATCTTGGCCTTC 60922555 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 60922554 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTC 60922495 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 60922494 TTCACAAAGATTTGCAT 60922478 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || | ||| || |||||| || || || || Sbjct 60922902 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 60922843 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| ||||| || ||||| || || ||||| || Sbjct 60922842 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGGATCTTGGCCTTC 60922783 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| || ||| || || |||| ||| | || ||||||||||| || Sbjct 60922782 ACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 60922723 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 60922722 TTCACAAAGATCTGCAT 60922706 >seq3640 Length=31815103 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || | || || |||||| || || || || Sbjct 21636552 GTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTGCTTCCCG 21636493 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || ||||| |||||||| ||||| |||||| || Sbjct 21636492 GCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTG 21636433 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| || || || | ||| | || ||||||||||| || Sbjct 21636432 ACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 21636373 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 21636372 TTCACAAAGATCTGCAT 21636356 >seq520 Length=73916538 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || || || || || || ||||| || |||||||| || | || || |||||| Sbjct 72484115 ACCAAGTGCATGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCC 72484174 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || ||||| |||| || | ||| | || || ||||||||||| ||||| Sbjct 72484175 AGCTGCTTCCCAGCAAAGATCAGCCTCTGCGGATCAGGGGGAATGCCTTCCTTGTCTTGG 72484234 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 |||||| || | | |||| ||| || ||| || || || | ||| | || ||| Sbjct 72484235 ATCTTTGCCTTGACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGTGATGGTCTTG 72484294 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||||| || || ||||| |||||||| Sbjct 72484295 CCGGTCAGGGTCTTCACAAAGATCTGCAT 72484323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420095085660936