Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3640 156 8e-33 seq1231 84.2 4e-11 seq1230 84.2 4e-11 >seq3640 Length=31815103 Score = 156 bits (172), Expect = 8e-33 Identities = 395/590 (67%), Gaps = 22/590 (4%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||||| |||| || || ||| ||||| ||||| || || ||| ||||| ||| Sbjct 24468866 ATCGAATACCATGATATTTGGCAAATGTATAAGAAAGCTGAGGCTTCCTTTTGGACGGCC 24468807 Query 42345 GAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399 ||||| | || || ||||||||| | || |||||| | ||| |||| | | Sbjct 24468806 AAGGAGGTGGATCTTTCCAAGGACATTCAGCA--CTGGGAAGCTCTGAAGCCTGATGA-G 24468750 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 ||| | |||| | | | ||||| ||||| || || ||| |||||||| |||| Sbjct 24468749 AAA--TATTTCATATCGCATGTTCTGGCTTTCTTTGCAGCTAGTGATGGCATAGTAAATG 24468692 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTA 42517 | ||| ||| | || | |||| || ||| ||| ||||| ||||| ||||| Sbjct 24468691 AAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATTACA--GAGGCTCGCTGTTTCTA 24468634 Query 42518 CGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---A 42574 |||||||| || ||||| || ||| |||| ||||| |||| | || |||| | Sbjct 24468633 TGGCTTCCAAATTGCCATGGAAAACATGCATTCTGAAATGTAT---AGTCTCCTCATTGA 24468577 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 || ||||| ||| || || | | || ||||| ||||| | |||||||| Sbjct 24468576 TACTTACATTAAAGATTCCAAAGAAAGGGAATATCTCTTCAATGCCATTTAAACGATGCC 24468517 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694 || ||||||||||||| || ||||| | | ||| | | || || || | Sbjct 24468516 TTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGTTAGATTGGGGACAAAGAGGCTACCTA 24468457 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754 || || | | ||||||||| | || || || ||||||||||| || || | || || Sbjct 24468456 TGGAGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGC 24468397 Query 42755 CTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 || || |||||||||||| | ||| | |||||| || ||||| || || || |||| Sbjct 24468396 ATCAATATTCTGGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCCAATGAAC 24468338 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 | || ||||| || ||||| | || | |||||||||||||| ||||| Sbjct 24468337 TTATTAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTC 24468288 >seq1231 Length=116334831 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || |||||| | || || || || || ||||||||||| | || || | || |||||| Sbjct 53055366 GTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATATTCTGG 53055307 Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 || ||| ||| |||| | ||||| |||||||| || || || |||||||||||||| || Sbjct 53055306 CTAAAGAAGAGAGGTCTT-ATGCCTGGACTCACTTTTTCCAATGAACTCATCAGCAGAGA 53055248 Query 42827 CGA 42829 || Sbjct 53055247 TGA 53055245 >seq1230 Length=159902609 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || ||||||||||| || || | || || || || |||||| Sbjct 150440456 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGG 150440397 Query 42768 CTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | ||| | ||||||||| ||||| || || || ||||| || ||||| || Sbjct 150440396 CTCAAGAAACGAGGACT-GATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 150440338 Query 42827 CGAGG 42831 |||| Sbjct 150440337 TGAGG 150440333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944248567045280