Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1230 260 1e-64 seq3188 105 6e-18 seq233 104 2e-17 >seq1230 Length=159902609 Score = 260 bits (288), Expect = 1e-64 Identities = 584/870 (67%), Gaps = 8/870 (1%) Strand=Plus/Minus Query 20023 CTATACTGCCATTTCCATACGAATGGTAGGATGCGGGCAGTAGTCCACCAGTCTAAAA-T 20081 ||| || ||||||||||| ||| || |||||||| || || |||||| ||| | Sbjct 40602626 CTAAACAGCCATTTCCATTTTAATAGTTGGATGCGGATTATAA-CCTTCAGTCTTAAAGT 40602568 Query 20082 CATCAGGTGTAAACTCTTCCATGGAAGAAACAGACCGGAGTATCTCCAGGCGCGGAAAGG 20141 | |||| | | || || || || | ||| || || || | || ||| || | Sbjct 40602567 CTTCAGCTTTTAAATCATCAATTGTCTCAACTTTTCGAAGGATTTTGAGCTTCGGGAAAG 40602508 Query 20142 GACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAGATGTGGG 20201 | | ||| ||| ||||| | | || ||||| || || | ||| ||||| | Sbjct 40602507 GTCTTGGTTCTCGCTGAAGCTGAATCTTCAGCGGCTCGATGTGATTCAGGTAAATGTGTG 40602448 Query 20202 CATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATAT 20261 |||||||||| || |||| ||| || || || | || | || | || || | ||| | Sbjct 40602447 CATCTCCCAAAGTATGAACAAAGTCACCTGGCTTGAGCCGGGTGATGTGCGCGATCATGT 40602388 Query 20262 AAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACC 20321 | || | |||| |||||||| ||||| || || | |||| |||||||||||||||| Sbjct 40602387 ACGTGAGCAGGGCGTAGCTGGCGATGTTGAATGGCATGCCCAGGCCCATGTCTCCCGACC 40602328 Query 20322 TCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGAC 20381 ||| |||||||| ||||| ||||| ||||| | || || || || || | | ||||| Sbjct 40602327 GCTGGTACAGCTGGCAGGACAGCTCGCCGTCCACCACGTAGAACTGGCAGAGGACGTGAC 40602268 Query 20382 AGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTC 20441 | || || |||||||||| | | || || ||||| |||||||| |||||||||| Sbjct 40602267 ACGGGGGCAGCGCCATCAGAGGGAGATCTTTTGGATTCCAAGCACACATGATGATTCTTC 40602208 Query 20442 TATCGTGCGGATTATTTTTTATTAAATCCA-CAATGTACGACAATTGGTCAAACCCCTGG 20500 | |||| || | |||| || ||| | || | | | || |||||||| || || Sbjct 40602207 TGTCGTCAGGGTGGGTTTTGATGGTATCGATCACTTTTTG-CAGTTGGTCAACTCCTTGA 40602149 Query 20501 CCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCG 20560 |||| ||| || | |||| || ||| | |||||||| |||||||||||||| || Sbjct 40602148 CCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGGAAGCCA 40602089 Query 20561 TAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCC 20620 ||||| || ||||| ||||| || | |||| | | || | || |||| || || Sbjct 40602088 TAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTAGAGAATCCCAGGCCATCCAGAAAGTCT 40602029 Query 20621 CTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTA 20680 | ||| ||||| ||||| ||||| ||||| | || || || | | || || Sbjct 40602028 CGGGATCCATTGGCATCCCAGATCTTCACTCCCTTCGAAGACAGTTCTTTAGCGTTTGTG 40601969 Query 20681 CTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTG 20740 ||||| | |||||| |||| ||| | || || || ||| ||||| | || || Sbjct 40601968 GATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAACACATGTTTGGTT 40601909 Query 20741 GTTAGTAAGGGAAAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAGG 20800 || || | ||||| | || | ||| || || | ||||||| ||| || | | ||| Sbjct 40601908 GTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCAGGCCGAACACCTACAGG 40601849 Query 20801 GTGCCTATGCCGGTGCGGTCGAGTCGATC--GCTGCCACGGCACAAAATTTCCCTCAACT 20858 ||||| |||| |||||||| ||| || | ||||| | | || | | || || Sbjct 40601848 GTGCCGGTGCCCGTGCGGTC--GTCCTTCCTGGAGCCACAGTGGAGGATGTGCTCCACCT 40601791 Query 20859 GCCTGAGATACTGAAGTTCCTCGTGGGGCG 20888 ||| || ||||| || ||| |||| |||| Sbjct 40601790 GCCCCAGGTACTGCAGCTCCCCGTGCGGCG 40601761 >seq3188 Length=83067054 Score = 105 bits (116), Expect = 6e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| || || | |||| |||||||| ||||| || || || |||| ||| Sbjct 66355469 TGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAACGGCACGCCCAGGCCC 66355410 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 ||||||||||||| ||| |||||||| ||||| ||||| ||||| | || || || || Sbjct 66355409 ATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTCCACCACGTAGAACTGG 66355350 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || | |||||| || || |||||||||| Sbjct 66355349 CAGAGGGCGTGACACGGGGGCAGCGCCATCA 66355319 >seq233 Length=141296404 Score = 104 bits (114), Expect = 2e-17 Identities = 209/308 (68%), Gaps = 3/308 (1%) Strand=Plus/Plus Query 20159 AGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGA 20218 ||||| | | ||||||| | || || || ||| || || |||| |||||| || | | Sbjct 68913463 AGCTGAATCTTTAGTGGCCCAATGTGATTTAGGTAAATATGTGCATTTCCCAAAGTATTA 68913522 Query 20219 ATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAG 20278 ||| || | ||| | |||||||||| || || | ||| || || | |||| |||| Sbjct 68913523 C-AAAGTCACTGGGCTTTAGACCAGTAATGTGTGCTATCATGTATGTAAGCAGGGCATAG 68913581 Query 20279 CTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAG 20338 ||||| ||||| || | | || || || |||||||| |||| ||| |||| ||| Sbjct 68913582 CTGGCGATGTTGAACTGCATGCCAAAGCCTATGTCTCCTGACCACTGGTACAAACAGCAG 68913641 Query 20339 GAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATC 20398 || |||||| | | | ||||| || || || | || || | || |||| |||| Sbjct 68913642 GACAGCTCATCATTCACCACATAGAACTGGCAGAGGGCATGGCACAGAGGCAGCGACATC 68913701 Query 20399 AACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATT--AT 20456 | | | | || |||| |||||||| ||||||||||| || || || || || Sbjct 68913702 AGAGGAAGAACTTTTGGATTCCCAGCACACATGATGATTCTTCTGTCATGAGGGTTGGAT 68913761 Query 20457 TTTTTATT 20464 ||||| || Sbjct 68913762 TTTTTTTT 68913769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441330439245520