Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq3972 84.2 2e-11 seq1582 82.4 6e-11 >seq3972 Length=29216678 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| ||| || |||||||| || || ||| ||| ||||| ||||||||||| | Sbjct 8003197 CCGCCTCGCAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGAA 8003256 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | ||| || | || |||| || ||||| |||||| ||||||||||||| || || Sbjct 8003257 AGAGTGTGGC-CATCCTCCAGCTGTTTGCCCGCAAATGTCAGGCGCTGCTGGTCAGGTGG 8003315 Query 34020 CACGCTCTCTTTGTC 34034 | || ||| ||||| Sbjct 8003316 GATGCCCTCCTTGTC 8003330 >seq1582 Length=98468360 Score = 82.4 bits (90), Expect = 6e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||| ||| || |||||||| || || ||| |||||||||||||||||||| || Sbjct 98016068 CCACCTTGCAGACGAAGCACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAAT-TGGA 98016010 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | || |||| || ||||| ||||||||||| |||||||| || Sbjct 98016009 AAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTC 98015956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397025244637756