Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2763 129 1e-24 seq1 125 2e-23 seq233 118 3e-21 seq3398 98.7 2e-15 seq4546 93.3 1e-13 seq3641 93.3 1e-13 >seq2763 Length=65901067 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 60923124 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 60923065 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||| ||||||||||| || || ||||| || Sbjct 60923064 ATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTC 60923005 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | || || || | ||||| ||||| |||||||| ||||||||| Sbjct 60923004 TCAATGGTATCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTGACG 60922945 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 60922944 AAAATCTGCAT 60922934 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 60922896 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 60922837 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||| ||||||||||| || || ||||| || Sbjct 60922836 ATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTC 60922777 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | || || || || ||||| ||||| |||||||| ||||| || Sbjct 60922776 TCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACA 60922717 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 60922716 AAGATCTGCAT 60922706 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 824229 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 824288 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||||| ||| || || || || ||||| | || ||| | || Sbjct 824289 AAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 824348 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| || Sbjct 824349 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 824408 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||| ||||| || || | || || ||||| |||||||| Sbjct 824409 TCGAGAGGGATAGTCTTTCCTGTACGGGTTTTTACGAAAATCTGCAT 824455 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || || || ||| Sbjct 60922668 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 60922609 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||| ||||||||||| || || ||||| || Sbjct 60922608 ATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTC 60922549 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || | ||||| ||||| |||||||| ||||| || Sbjct 60922548 TCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACA 60922489 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 60922488 AAGATTTGCATTTTG 60922474 >seq1 Length=114275543 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 8597720 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 8597661 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||||| ||| || || || || ||||| | || ||| | || Sbjct 8597660 AAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 8597601 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| ||| Sbjct 8597600 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACT 8597541 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || || || || || ||||| |||||||| Sbjct 8597540 TCAAGAGTGATAGTTTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 8597494 >seq233 Length=141296404 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || ||||||| ||| | ||||| || ||||||| | Sbjct 108315109 CCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTGCTTTTGAATGGTATAGTCAGAC 108315050 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||||| ||| || || || || ||||| | || ||| ||||| Sbjct 108315049 AAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGA---TCTGGA 108314993 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| Sbjct 108314992 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCG 108314933 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| || || || || || ||||| |||||||| Sbjct 108314932 ACCTCGAGAGTGATAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 108314883 Score = 109 bits (120), Expect = 1e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || ||||||| ||| || || || || || ||||| | Sbjct 109921662 CCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAC 109921721 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||||| ||| || || || || ||||| | || ||| | || Sbjct 109921722 AAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 109921781 Query 288367 ATTCCTTCTTTATCCTGG----ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||||||||||||||| || || || || || |||||||| | ||| | ||| Sbjct 109921782 ATTCCTTCTTTATCCTGGCCTTATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTC 109921841 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || || || || ||||| |||||||| Sbjct 109921842 GACCTCCAGAGTGATAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 109921892 >seq3398 Length=72247402 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 1977474 TCGTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 1977415 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||| | ||||| ||| ||||||| || || ||||| || Sbjct 1977414 ATGAGCCTCTGCTGGTCAGGAGGGGTCCCTTCCTTACCCTGGATCTTGGCCTTCACATTC 1977355 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || | | || || | || || || || ||||| ||||| |||||||| ||||||||| Sbjct 1977354 TCAGTGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACG 1977295 Query 288463 AA 288464 || Sbjct 1977294 AA 1977293 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| || || || || || | || ||||| || || || | ||||| || || || | Sbjct 17330115 CTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAA-A 17330057 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 |||||||||| | | |||||| || || || || |||||||| ||||| || || | Sbjct 17330056 TCAGACGCTGCGGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCT 17329997 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | | || || | || | || || ||||| ||||||| |||||| ||||| || | Sbjct 17329996 GGCTGGTGTCTCTGGGCTCAGCCTCAAGGGTGATGGTCTTCCTGGTCAGGGTCTTCACAA 17329937 Query 288464 ATATCTGCAT 288473 | |||||||| Sbjct 17329936 AGATCTGCAT 17329927 >seq4546 Length=144923918 Score = 93.3 bits (102), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || ||||||| || | || ||||| || |||||||| Sbjct 25087018 CCACCACAAAGTCTCAACACAAGATGAAGAATGGTCTCCTTTTGAATGTTATAGTC---- 25086963 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| || || || || ||||| | || || | || Sbjct 25086962 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCAAGAGGA 25086903 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || | || || ||||||| | ||| | ||| || Sbjct 25086902 ATTCCTTCCTTATCCTGGATCTTGGTCTTTACATTTTCTAATGTATCTGAGGGTTCAACC 25086843 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || |||||||| | || || | | ||| |||||||| Sbjct 25086842 TCGAGAGTCATGGTCTTCCCCATAAGGGTTATTATGAAAATCTGCAT 25086796 >seq3641 Length=30143674 Score = 93.3 bits (102), Expect = 1e-13 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | ||| || || || | ||| ||||| ||||| || || || | Sbjct 24919902 CCACCTCTCAGACGAAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGAA 24919843 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | ||||| || | || ||||||||||| || | |||| Sbjct 24919842 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCCCAAATATCAGACGCTGCTGGTCAGGTGGG 24919783 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || |||||||| ||||| || || || || | || || | || || Sbjct 24919782 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTC-ATGGTGTCACTGGGCTCGACC 24919724 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| | |||| ||||| ||||| || || |||||||| Sbjct 24919723 TCAAGGGTGATGG---TCCCCGTCAGGGTCTTCACAAAGATCTGCAT 24919680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179538352235684