Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2763 140 3e-28 seq1 129 6e-25 seq3640 127 2e-24 seq520 127 2e-24 seq233 118 1e-21 seq3398 109 5e-19 seq4546 96.9 3e-15 seq1230 89.7 5e-13 seq3641 86.0 6e-12 >seq2763 Length=65901067 Score = 140 bits (154), Expect = 3e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || |||||||| || | | ||||| | ||||| |||||||||||| Sbjct 60922674 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 60922615 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| ||||| || ||||| || || || || || ||| Sbjct 60922614 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGGATCTTGGCCTTC 60922555 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | |||||||||||||| || Sbjct 60922554 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTC 60922495 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || || ||||||||||| Sbjct 60922494 TTCACAAAGATTTGCATTTT 60922475 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 60923130 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 60923071 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| ||||| || ||||| || || || || || ||| Sbjct 60923070 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGGATCTTGGCCTTC 60923011 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||||| || ||||| || | || | |||||||||||||| || Sbjct 60923010 ACATTCTCAATGGTATCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTC 60922951 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 60922950 TTGACGAAAATCTGCAT 60922934 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 60922902 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 60922843 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| ||||| || ||||| || || || || || ||| Sbjct 60922842 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGGATCTTGGCCTTC 60922783 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||||| || ||||| || | || | |||||||||||||| || Sbjct 60922782 ACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 60922723 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 60922722 TTCACAAAGATCTGCAT 60922706 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||||||||| || | Sbjct 824228 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 824287 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| || |||||||| ||| |||| || | ||||| || ||||| Sbjct 824288 CAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 824347 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | |||||| || || || Sbjct 824348 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 824407 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || || |||||||||||||| ||||| Sbjct 824408 CTCGAGAGGGATAGTCTTTCCTGTACGGGTTTTTACGAAAATCTGCAT 824455 >seq1 Length=114275543 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||||||||| || | Sbjct 8597721 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 8597662 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| || |||||||| ||| |||| || | ||||| || ||||| Sbjct 8597661 CAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 8597602 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | |||||| || || || Sbjct 8597601 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 8597542 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| | ||| | || || || || | |||||||||||||| ||||| || Sbjct 8597541 TTCAAGAGTGATAGTTTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 8597491 >seq3640 Length=31815103 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | || |||||| | ||||| |||||||| ||| Sbjct 21636552 GTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTGCTTCCCG 21636493 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||| || ||||| || ||||| || ||||| || ||| ||| Sbjct 21636492 GCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTG 21636433 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | || ||||| || | || | |||||||||||||| || Sbjct 21636432 ACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 21636373 Query 64427 TTTACGAAAATTTGCATT 64444 || || || || |||||| Sbjct 21636372 TTCACAAAGATCTGCATT 21636355 >seq520 Length=73916538 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 || || || || ||||| || |||||||| || | || ||||||| | ||||| |||||| Sbjct 72484121 TGCATGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGC 72484180 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || |||| |||| | || || ||||| ||||| || ||||| || ||| Sbjct 72484181 TTCCCAGCAAAGATCAGCCTCTGCGGATCAGGGGGAATGCCTTCCTTGTCTTGGATCTTT 72484240 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | ||||||| || || || || | || | ||||||||||||| Sbjct 72484241 GCCTTGACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCGGTC 72484300 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || || || || || ||||| Sbjct 72484301 AGGGTCTTCACAAAGATCTGCAT 72484323 >seq233 Length=141296404 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || || || || ||||||||||| || | | || || | Sbjct 109921673 TCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCC 109921732 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| |||| || | ||||| || ||||||||||||||||| Sbjct 109921733 ATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 109921792 Query 64348 TTCTTG----TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAG 64403 || || ||| || ||||||| || | |||||| || || || || | || Sbjct 109921793 ATCCTGGCCTTATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCCAGAG 109921852 Query 64404 TTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | ||||| || || | |||||||||||||| ||||| || Sbjct 109921853 TGATAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 109921895 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || || | ||||||||| | || || | | || || | Sbjct 108315098 TCTCAACACAAGATGAAGAGTGGACTGCTTTTGAATGGTATAGTCAGACAAAGTACGTCC 108315039 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| |||| || | ||||| || |||||||||||||| || Sbjct 108315038 ATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCTGGAGGAATTCCTTCCTT 108314979 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||||||| || | |||||| || || || || | ||| | Sbjct 108314978 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGAT 108314919 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| || || | |||||||||||||| ||||| || Sbjct 108314918 AGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 108314880 >seq3398 Length=72247402 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 1977480 GTCGACTCGTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 1977421 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| ||||| | ||||| || | || || || ||| Sbjct 1977420 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGGTCCCTTCCTTACCCTGGATCTTGGCCTTC 1977361 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| || |||| || ||||| || | || | |||||||||||||| || Sbjct 1977360 ACATTCTCAGTGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 1977301 Query 64427 TTTACGAAAA 64436 || ||||||| Sbjct 1977300 TTGACGAAAA 1977291 >seq4546 Length=144923918 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| | | || ||||||||||| || || | || || | Sbjct 25087007 TCTCAACACAAGATGAAGAATGGTCTCCTTTTGAATGTTATAGTC----AAAGTACGTCC 25086952 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| |||| || | |||||||| ||||||||||||| || Sbjct 25086951 ATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCAAGAGGAATTCCTTCCTT 25086892 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||||||| || | |||||| || || || || | ||| | Sbjct 25086891 ATCCTGGATCTTGGTCTTTACATTTTCTAATGTATCTGAGGGTTCAACCTCGAGAGTCAT 25086832 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || | | ||| ||| |||||| ||||| || Sbjct 25086831 GGTCTTCCCCATAAGGGTTATTATGAAAATCTGCATCTT 25086793 >seq1230 Length=159902609 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | |||||| || || | || | ||||| || ||||||||||| | Sbjct 130889236 CCACCTCGCAGACGAAGCACCAGGTGCAGGGTGGCCTCTTTCTGGATGTTGTAATCCGAA 130889177 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||| ||||| ||| | || || |||||||||| || || Sbjct 130889176 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGATGCTGCTGGTCAGGTGGG 130889117 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| | |||| ||||| ||| || | || |||| || | || Sbjct 130889116 ATGCCCTCCTTGTCTTGGA-TTTTGGCTTTGACATTCTTGATGGTGTCACTGGGCTTGAC 130889058 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || |||| || || || || || ||||| Sbjct 130889057 CTCAAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAGATCTGCAT 130889010 >seq3641 Length=30143674 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || || | || || ||||| || ||||||||||| | | ||||| | || Sbjct 24919888 AAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATC 24919829 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||| ||||| || | || || ||||||||||| || || || || || || || Sbjct 24919828 CTCCAGCTGTTTGCCCCCAAATATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTC 24919769 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | |||| ||||| ||| || || || |||| || || || || | || | || Sbjct 24919768 TTGGA-TTTTGGCTTTGACATTCT-CATGGTGTCACTGGGCTCGACCTCAAGGGTGATGG 24919711 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||| || || || || || ||||| Sbjct 24919710 TC---CCCGTCAGGGTCTTCACAAAGATCTGCAT 24919680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499596846590320