Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq3973 185 1e-41 seq1582 125 1e-23 >seq3973 Length=36798880 Score = 185 bits (204), Expect = 1e-41 Identities = 212/285 (74%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||||||||| || ||||| |||||||| | || || || | ||| Sbjct 11886174 AAGGGACAGCCCTTCACATTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATT 11886233 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | |||||||| || || || || ||||| || |||||||| | || ||||| ||| | Sbjct 11886234 TTAAAACCTACTTCTCCACCAAAAGTGCTCGGCTTCCAGTAGTCAGGAGAGCATATGGCA 11886293 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || ||||||| ||||||||||| || || || || | || | ||| | ||||| ||| Sbjct 11886294 TTACCCATGAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCCACCATGGTTTCACCAAAG 11886353 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 ||||| | ||||| || ||||| || | | | | | ||| || || | ||| || | | Sbjct 11886354 ATGGCGTCTGGACGGGGCTTTTCTACCAGCAGGGCGGGGTATAGCTCCATAGCATCAATG 11886413 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || |||||||| ||||||||||| ||||| || |||||||||||| Sbjct 11886414 TCCCCATAGAGTGCTTCCAACTCTGCAGCCATTTCCTTCTCACCT 11886458 Score = 170 bits (188), Expect = 3e-37 Identities = 172/224 (77%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||||||||| || |||||||| || || || ||||| || |||||||| || Sbjct 11887883 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCGCACACT 11887942 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 | ||| ||||| | |||||| ||||||||||||||||||| || ||||| | |||||| Sbjct 11887943 CGGTTATGTTCCCGCAGCCAGATGGTGGCGTACATCATTAGGCCAGGCACCAGACCAAAG 11888002 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| ||||| |||| | || || | | || | |||| ||| | Sbjct 11888003 ACCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGGATGTGAGGAGGGTACATCATCTCT 11888062 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 ||||| || |||||||| ||||| ||||||| ||| || ||||| Sbjct 11888063 ACCTGAGTATCTTTGACTGTGGGAGGATACACTTCTCCATCAAT 11888106 Score = 138 bits (152), Expect = 2e-27 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 10122 CTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAA 10181 ||||||||||| |||| |||| | |||||||| ||||||||| ||| ||| | ||| Sbjct 11889045 CTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAAA 11889104 Query 10182 AATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCG 10241 || || || |||||||| || | || || |||||||||| || |||||||||||||| Sbjct 11889105 AACTGATGGGTAAAGTGCTGGGCAAAGAATGCGAACATCATATTTGTGCCCTGGGGATCA 11889164 Query 10242 GGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | |||| | || || ||| |||||||||| | ||||||| || || Sbjct 11889165 GGGATGAACTTTCTCCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAG 11889220 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| ||||||||| || || || || || | ||| || Sbjct 11889933 TCACCTTTCACGCCCATGGGAGTTGGGCAGTCATCAGCCACAGGCGGAAGGGCTCTGGTG 11889992 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || || |||||||||||||| ||||||||||| | | || || | Sbjct 11889993 TAATAGGAGAGGTTAGAGAATGCTTCCCAGCTTTTGTAGCCATAGTGCATATTATAAGTC 11890052 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||| ||||||| | || |||||| Sbjct 11890053 GGTGGACTATCAATCAAATGGGCTCTGGCT 11890082 Score = 96.9 bits (106), Expect = 5e-15 Identities = 196/289 (68%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| ||| | ||||| ||||| || || |||| | ||| || | | || || Sbjct 11887300 CCAGCAATTTGTTTGGTGAATGATTCCACAAACTGGGTAAGTCCATGTTCCAGTAGAATA 11887359 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || ||||| || | || |||| || || | | || | || |||| | || Sbjct 11887360 GAGTTGTTATAGAGAAACTGTTGATAGTTGTATTCCTGATCATCAATTTGAAAGGCGTCC 11887419 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| ||| | ||||||| | ||||| || || ||||| || || || |||||||||||| Sbjct 11887420 GGCAGCAGGGGATGCCAGTGATAGAGTGTGTTAAACTCAGCAGCGATACGGTTCTGGTAC 11887479 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | ||| |||||||| | || | |||||| || || | Sbjct 11887480 TGGAATTGTTGGT--TGAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAAGTGATAGCCAC 11887537 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | | ||||| ||||| | | || | ||| ||||| || || || || Sbjct 11887538 TCAAGTGCTGTACATAGTCTTCAATCACAATCTTAATAGTCTCTCCTGT 11887586 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || ||||||| | ||||||| || ||||| |||||||| ||| ||| | Sbjct 11891047 CTTACGTGTGGAACAGTTTTCACCATAAAAGCCTGTCCGGGTACAATCACACTTATACTG 11891106 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 || || ||||| |||| || || |||| || || || |||| ||||||||||| || Sbjct 11891107 GTCGAATCCCACACTCATACACACACCTCTGTTTTGACATGGGTTGGAACAGCAAGGATT 11891166 Query 10960 GGCTGCAAT 10968 ||| |||| Sbjct 11891167 TGCTACAAT 11891175 >seq1582 Length=98468360 Score = 125 bits (138), Expect = 1e-23 Identities = 180/250 (72%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || ||||||| || ||| || || || || ||||| || ||||||||| Sbjct 85098378 GTGGCCGTGTTGACGATGTTAAAGCCTGTCTCTCCACCAAACGTGCTCGGCTTCCAGTAC 85098319 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || ||||||||| ||| | | ||| ||||| | |||||| |||||||| | ||| Sbjct 85098318 TCTGGAGAGCAGATGGGATTCCCTAGGAGACCTTTGAGGGAAAAGGGAGCCCCAATCTCT 85098259 Query 9053 ATGATGCTCTCACCGAAGATGGCA-CCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGT 9110 || || ||||| || ||||||| |||| | || |||| | || | |||| | || Sbjct 85098258 ATCATACTCTCCCCAAAGATGGAGTCCGGTAGGCACTTTTCCA--GAAGCAGCCCTGGGT 85098201 Query 9111 AGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCT 9170 ||| || | || |||| ||| || || || | |||||||| || || |||||||||| Sbjct 85098200 AGAACTCCAAGGCATCGATGTCTCCGTACAGCTCCTCCAACTCTGCTGCCATCTCCTTCT 85098141 Query 9171 CACCTACAAG 9180 | ||| |||| Sbjct 85098140 CTCCTGCAAG 85098131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723658540205200