Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2763 134 2e-26 seq3641 111 2e-19 seq3972 104 3e-17 seq520 93.3 5e-14 seq3398 89.7 6e-13 seq1582 87.8 2e-12 >seq2763 Length=65901067 Score = 134 bits (148), Expect = 2e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || ||| || ||||| |||||||| || |||||||| | Sbjct 60922692 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 60922633 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||||||||| || || | | ||||||||| | || | | ||||| Sbjct 60922632 TCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTA 60922573 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||| || | ||||| |||| |||||| Sbjct 60922572 TCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATG 60922513 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||| ||||| || || |||||||||||||||||| Sbjct 60922512 GTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTTG 60922474 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | |||| ||||| |||| || ||| || ||||| |||||||| || Sbjct 60922932 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 60922873 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||||||||| || || || | | ||||||||| | || Sbjct 60922872 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 60922813 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| ||| |||||| ||| | || | | || || || | ||||| Sbjct 60922812 ATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCACC 60922753 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 60922752 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 60922706 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || || || | ||||| |||| || ||| || ||||| |||||||| || Sbjct 60923161 GCCACCCCTCAAGCGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 60923102 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || ||||||||||| || || || | | ||||||||| | || Sbjct 60923101 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 60923042 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | | ||||| ||| |||||| ||| | || | | || || || | ||||| Sbjct 60923041 GATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCAC 60922982 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || || || || ||||| Sbjct 60922981 CTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 60922934 >seq3641 Length=30143674 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | ||| | |||||| |||| || ||| || ||||| ||||| || | Sbjct 24919904 TGCCACCTCTCAGACGAAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCG 24919845 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||| ||||| | ||||||| ||||||||||| | | Sbjct 24919844 AAAGAGTGCGGCCATCCTCCAGCTGTTTGCCCCCAAATATCAGACGCTGCTGGTCAGGTG 24919785 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| ||| || |||| | | || ||||| || | || | Sbjct 24919784 GGATGCCCTCCTTGTCTTGGATTTTGGCTTTGA-CATTCTCATGGTGTCACTGGGCTCGA 24919726 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | ||||||| | |||||||| || || |||||||| ||||| Sbjct 24919725 CCTCAAGGGTGATGG---TCCCCGTCAGGGTCTTCACAAAGATCTGCAT 24919680 >seq3972 Length=29216678 Score = 104 bits (114), Expect = 3e-17 Identities = 161/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | ||| | |||||| |||| || ||| || ||||| ||||| || | Sbjct 8003195 TGCCGCCTCGCAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCG 8003254 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||| | | || || ||||| ||||| || ||| ||| |||||||||||| | | Sbjct 8003255 AAAGAGTGTGGCCATCCTCCAGCTGTTTGCCCGCAAATGTCAGGCGCTGCTGGTCAGGTG 8003314 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| ||| || |||| || | | |||||||| | || | Sbjct 8003315 GGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCGCTGGGCTCGA 8003374 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | | ||||| | | ||||||| || || ||||||| ||||| Sbjct 8003375 CCTCAAGGGCGATGG-TCTCCCCGTCAAGGTCTTCGCAAAGATCTGCAT 8003422 >seq520 Length=73916538 Score = 93.3 bits (102), Expect = 5e-14 Identities = 112/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | |||||| |||| || |||||| ||||| ||||||||||| Sbjct 72484325 CCACCTCTCAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 72484384 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || |||||||| ||||| || |||| | |||||| || | || Sbjct 72484385 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGATCAG-GGGG 72484443 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | || |||||||| |||||| ||||| Sbjct 72484444 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGA 72484474 >seq3398 Length=72247402 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| || ||| || ||||| |||||||| || |||||||| | || || Sbjct 1977492 ACCAGGTGCAGGGTCGACTCGTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 1977433 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC-GGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| || || || | | ||||||||| || || | || ||||| || Sbjct 1977432 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGGTCCCT-TCCTTACCCTG 1977374 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | || | ||||| || | ||||| |||| |||||||| || Sbjct 1977373 GATCTTGGCCTTCACATTCTCAGTGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 1977314 Query 46564 GCCCGTCAGCGTTTTAACAAA 46584 ||| ||||| || || || || Sbjct 1977313 GCCGGTCAGGGTCTTGACGAA 1977293 >seq1582 Length=98468360 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||| | ||| | |||||| |||| || |||||| || || ||||| | || Sbjct 98016070 TGCCACCTTGCAGACGAAGCACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAATTGG 98016011 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||| ||||| || ||||||| ||||||||||| | Sbjct 98016010 AAAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAAGTG 98015951 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | || |||||| || ||| || |||| || | | ||||| || | | | Sbjct 98015950 G-GTGCCCTCCTTATCTTGGATTTTGACTTTGACATTCTCGATGGTGTCACT-GGGTGGA 98015893 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||||||||| | || ||||| || ||||| Sbjct 98015892 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGACTTCACAAA-ATCTGCAT 98015845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565184151244560