Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3641 127 2e-24 seq3640 127 2e-24 seq1230 127 2e-24 seq520 122 9e-23 seq2763 118 1e-21 seq3972 113 5e-20 seq1582 98.7 1e-15 seq4347 95.1 1e-14 seq3398 95.1 1e-14 seq1989 84.2 2e-11 >seq3641 Length=30143674 Score = 127 bits (140), Expect = 2e-24 Identities = 166/228 (73%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || ||||| | |||||||| | || |||||| ||| Sbjct 24919680 ATGCAGATCTTTGTGAAGACCCTGACGGGGA---CCATCACCCTTGAGGTCGAGCCCAGT 24919736 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | || || | | |||| ||||||| ||||| ||||| || || | ||||| Sbjct 24919737 GACACCATGAGAATG-TCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 24919795 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | | ||||||||||||||| || | ||||| || || |||||| Sbjct 24919796 CAGCGTCTGATATTTGGGGGCAAACAGCTGGAGGATGGCCGCACTCTTTCGGATTACAAC 24919855 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || ||||| ||||||| ||| ||||||| ||| Sbjct 24919856 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTTCGTCTGAGAGGTGGC 24919903 >seq3640 Length=31815103 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || ||||| ||||||||| |||| || ||| ||| Sbjct 21636355 AATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 21636414 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | | || | ||| |||| ||||| || || || || | || || Sbjct 21636415 CGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGATCA 21636474 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || || |||||||| || | ||||||||| |||||||| Sbjct 21636475 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGACGCACCCTCTCTGACTACAA 21636534 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| ||||| ||||| ||||| || || Sbjct 21636535 CATCCAGAAAGAGTCCACCCTGCACTTGGTCCTGCGCTTGAGGGGAGG 21636582 >seq1230 Length=159902609 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || ||||| || ||||||||| | || ||| || ||| Sbjct 130889010 ATGCAGATCTTTGTGAAGACCCTGACGGGGAAGACCATCACCCTTGAGGTCAAGCCCAGT 130889069 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| ||||||| ||||| ||||| || || | ||||| Sbjct 130889070 GACACCATCAAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 130889129 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 |||| || || | ||||||||||||||||| || | ||||| || || |||||| Sbjct 130889130 CAGCATCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTTTCGGATTACAAC 130889189 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || || || ||||| ||||||| ||| || |||| ||| Sbjct 130889190 ATCCAGAAAGAGGCCACCCTGCACCTGGTGCTTCGTCTGCGAGGTGGC 130889237 >seq520 Length=73916538 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| |||| || ||| ||| Sbjct 72484323 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 72484264 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | ||| |||| ||||| || || |||||| | || | Sbjct 72484263 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCCCCTGATCCG 72484204 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || |||||||| || | |||||||||| ||||||||| Sbjct 72484203 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 72484144 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | || |||| ||||| ||||| ||||| || || Sbjct 72484143 ATCCAGAAAGAGTCCACCATGCACTTGGTCCTGCGCTTGAGGGGAGG 72484097 Score = 98.7 bits (108), Expect = 1e-15 Identities = 109/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 ||| |||| ||||| || || || ||| | || || ||| |||| || | || || || Sbjct 72484467 AAAGATCCAAGACAAGGAAGGCATCCCC-CTGATCAGCAGAGGCTGATCTTTGCCGGGAA 72484409 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 |||||||| || | ||||||||| ||||||||||||||| ||||| | || ||||| Sbjct 72484408 GCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCA 72484349 Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||| ||||||| || Sbjct 72484348 CCTGGTGCTCCGTCTGAGAGGTGG 72484325 >seq2763 Length=65901067 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| || || || || || || ||||| ||||||||| | || || ||| || Sbjct 60922475 AAAATGCAAATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCCC 60922534 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| || || || || || || | ||| Sbjct 60922535 AGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCTCCTGAC 60922594 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| ||||||| | || ||||| |||||||| || | ||||| || |||||| Sbjct 60922595 CAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTAC 60922654 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || || |||| ||||| |||| ||||| |||| || || Sbjct 60922655 AACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGGGGTGG 60922704 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 60922934 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 60922993 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| || || || || || || | ||||| Sbjct 60922994 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCTCCTGACCAG 60923053 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| |||||||| || | ||||| || ||||||||| Sbjct 60923054 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 60923113 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || |||| ||||| |||| || || ||||| || ||| Sbjct 60923114 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGCTTGAGGGGTGGC 60923161 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 60922706 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 60922765 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| || || || || || || | ||||| Sbjct 60922766 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCTCCTGACCAG 60922825 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| |||||||| || | ||||| || ||||||||| Sbjct 60922826 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 60922885 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || |||| ||||| |||| ||||| ||||||| || Sbjct 60922886 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGG 60922932 >seq3972 Length=29216678 Score = 113 bits (124), Expect = 5e-20 Identities = 165/230 (72%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || | || || | ||||| | | ||||| || | || |||||| ||| | Sbjct 8003422 ATGCAGATCTTTGCGAAGACCTTGACGGGGAGA-CCATCGCCCTTGAGGTCGAGCCCAGC 8003364 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| ||||||| ||||| ||||| || || | ||||| Sbjct 8003363 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 8003304 Query 38364 CAGCGGCT--CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||| || ||||| ||||||||||||||||| || | | ||| || || |||| Sbjct 8003303 CAGCGCCTGACATTT--GCGGGCAAACAGCTGGAGGATGGCCACACTCTTTCGGATTACA 8003246 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| || || | || ||||| ||||||| ||| || |||||||| Sbjct 8003245 ACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTCCGTCTGCGAGGCGGC 8003196 >seq1582 Length=98468360 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/229 (71%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || | || |||||||| ||||||||| | || ||| | ||| Sbjct 98015845 ATGCAGATTTT-GTGAAGTCCCTGACGGGCAAGACCATCACCCTTGAGGTCCAC-CCAGT 98015902 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | | |||| ||||||| || || ||||| | ||| | ||||| Sbjct 98015903 GACACCATCGAGAATGTCAAAGTCAAAATCCAAGATAAGGAGGGCA--CCCACTTGACCA 98015960 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||||||||||||||||| || | ||||| || | | ||||| Sbjct 98015961 GCAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTTTCCAATTACAA 98016020 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || ||||| | || ||||| ||||||| ||| || ||| ||| Sbjct 98016021 CATTCAGAAGGAGTCCACCCTGCACCTGGTGCTTCGTCTGCAAGGTGGC 98016069 >seq4347 Length=47401472 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| || | || ||| ||| Sbjct 19988743 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCAAGGTTGAGCCCAGT 19988684 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||| ||| ||||| || || || ||| | || || Sbjct 19988683 GACACCATTGAGAATGTCAAGGCAAAGATCGAAGACAAGGAAGGTATACCCCCTGATCAG 19988624 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || | || |||||| | || | |||||||| ||||||||| Sbjct 19988623 CAGAGGCTGATCTTTGCTAGGAAGCAGCTGTAAGATGGATGCACCCTCTCTGACTACAAC 19988564 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGA 38463 ||||| || || | || ||||| ||||| |||| |||| Sbjct 19988563 ATCCAGAAAGAGTCCACCCTGCACTTGGTCCTGCACTTGA 19988524 >seq3398 Length=72247402 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || | || ||||||||| | || | ||| ||| Sbjct 17329927 ATGCAGATCTTTGTGAAGACCCTGACCAGGAAGACCATCACCCTTGAGGCTGAGCCCAGA 17329986 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | || | | |||| ||||||| ||||| ||||| || || | |||| Sbjct 17329987 GACACCAGCCAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCCG 17330046 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||||||||||||||||| || | ||||| || || |||||| Sbjct 17330047 CAGCGTCTGATTTT-GCGGGCAAACAGCTGGAGGATGGCCGCACTCTTTCTGATTACAAC 17330105 Query 38424 ATCCA-AAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || ||||| | | | ||| ||||||| | | || |||||||| Sbjct 17330106 ATTCAGAAAGGGTCCCCCCCCGCACCTGGTGCTTCATCTGCGAGGCGGC 17330154 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG-T 38311 ||||| || || || || ||||| ||||||||| | || || ||| ||| |||| | | Sbjct 1977293 TTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCACT 1977352 Query 38312 GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | || | | || | || |||| | || || || | || | ||||| ||| |||| Sbjct 1977353 GAGAATG-TGAAGGCCAAGATCCAGGGTAAGGAAGGGACCCCTCCTGACCAGCAGAGGCT 1977411 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 ||| | || ||||| |||||||| || | ||||| || |||||||||||||| || Sbjct 1977412 CATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAA 1977471 Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || |||| ||||| |||| || || |||| || ||| Sbjct 1977472 CGAGTCGACCCTGCACCTGGTCCTCCGCCTGAGGGGTGGC 1977511 >seq1989 Length=108143057 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 ||| |||| ||||| || || || ||| | || || ||| |||| || | || || || Sbjct 8822766 AAAGATCCAAGACAAGGAAGGCATCCCCCCTGATCAGCAGAGGCTGATCTTTGCTGGGAA 8822825 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 |||||||| | | ||||||||| |||||||||||||| || || | || |||| Sbjct 8822826 GCAGCTGGAAGGTGGACGCACCCTCTCTGACTACAACATCCAGAAAGAGTCCACCTTGCA 8822885 Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||||| || || Sbjct 8822886 CTTGGTCCTGCGCTTGAGGGGAGG 8822909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500124795915520