Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 154 3e-32 seq2763 141 2e-28 seq233 141 2e-28 seq3640 131 4e-25 seq520 118 2e-21 seq3972 107 4e-18 seq3641 107 4e-18 seq4347 104 5e-17 seq1989 91.5 3e-13 seq1230 91.5 3e-13 seq3188 86.0 1e-11 >seq1 Length=114275543 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| |||||||| ||||| || | | ||| | Sbjct 8597711 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 8597652 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || || || |||| ||| || || |||||||| ||||| Sbjct 8597651 CCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 8597592 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || || ||||| ||| |||||||| || Sbjct 8597591 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACTTCAAGAGTG 8597532 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || |||||||| | ||||||||||| | ||||| Sbjct 8597531 ATAGTTTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 8597494 >seq2763 Length=65901067 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| |||||||| ||||| || | | ||| | Sbjct 824238 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 824297 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || || || |||| ||| || || |||||||| ||||| Sbjct 824298 CCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 824357 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || || ||||| ||| || || || | Sbjct 824358 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGGG 824417 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||||||||| ||||||||||| | ||||| Sbjct 824418 ATAGTCTTTCCTGTACGGGTTTTTACGAAAATCTGCAT 824455 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || ||||| || | |||||| | |||||||| Sbjct 60923142 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 60923083 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| ||||| || ||||| || || || Sbjct 60923082 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGG 60923023 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||||||||| || ||| ||||| || | ||| | ||| Sbjct 60923022 ATCTTGGCCTTCACATTCTCAATGGTATC---ACTGGGCTCCACCTCCAAGGTGATGGTC 60922966 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 60922965 TTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 60922934 >seq233 Length=141296404 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| ||||||||||||| |||||||| | || || | | ||| | Sbjct 108315100 AGTCTCAACACAAGATGAAGAGTGGACTGCTTTTGAATGGTATAGTCAGACAAAGTACGT 108315041 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || || || |||| ||| || ||||||||||| ||||| Sbjct 108315040 CCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCTGGAGGAATTCCTTCC 108314981 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || || ||||| ||| || || || || Sbjct 108314980 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTG 108314921 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||||||||| | ||||||||||| | ||||| Sbjct 108314920 ATAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 108314883 Score = 138 bits (152), Expect = 3e-27 Identities = 164/222 (74%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| || ||||| ||||| || | | ||| | Sbjct 109921671 AGTCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGT 109921730 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || || || |||| ||| || || |||||||| |||||| Sbjct 109921731 CCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCT 109921790 Query 195043 TTGTCTTG----AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || || || || ||| || || || || || ||||| ||| || || || Sbjct 109921791 TTATCCTGGCCTTATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCCAG 109921850 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||||||||| | ||||||||||| | ||||| Sbjct 109921851 AGTGATAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 109921892 >seq3640 Length=31815103 Score = 131 bits (144), Expect = 4e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || || ||||| || | || || | |||||||| ||||| Sbjct 21636559 GTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTG 21636500 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || | || || || ||||| |||||||| |||||||| || || Sbjct 21636499 CTTCCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTT 21636440 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | |||||| |||||||||||||| ||||| || ||||| | ||||| || || Sbjct 21636439 TGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGT 21636380 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || || || || || | |||||| Sbjct 21636379 CAGGGTCTTCACAAAGATCTGCATT 21636355 >seq520 Length=73916538 Score = 118 bits (130), Expect = 2e-21 Identities = 147/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||||||||| || || ||||| || | || || | ||||||||| |||||||| || Sbjct 72484127 GTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTCCCA 72484186 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| || | || | || || ||||||||||| |||||||| || ||| |||| Sbjct 72484187 GCAAAGATCAGCCTCTGCGGATCAGGGGGAATGCCTTCCTTGTCTTGGATCTTTGCCTTG 72484246 Query 195064 ACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 || ||||||||||| || ||| || || || ||||| | ||||| || |||| Sbjct 72484247 ACATTCTCAATGGTATC---ACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGG 72484303 Query 195121 GTTTTTACGAACACTTGCAT 195140 || || || || | ||||| Sbjct 72484304 GTCTTCACAAAGATCTGCAT 72484323 Score = 116 bits (128), Expect = 8e-21 Identities = 114/146 (78%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| |||| || || | ||||||||| Sbjct 72484343 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 72484402 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||| ||||||| |||||||| Sbjct 72484403 AGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGA-TGCCTTCCTTGTCTTGG 72484461 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGT 195077 || ||| |||||| ||||||||||| Sbjct 72484462 ATCTTTGCCTTGACATTCTCAATGGT 72484487 >seq3972 Length=29216678 Score = 107 bits (118), Expect = 4e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || |||||||| | |||||| ||||| || Sbjct 8003215 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGAAAGAGTGTGGCCATCCTCC 8003274 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || || | || || || ||||| || || ||||| || |||||||| Sbjct 8003275 AGCTGTTTGCCCGCAAATGTCAGGCGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 8003334 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||||| ||||| ||||| |||||||| Sbjct 8003335 ATTTTGGCTTTGACATTCTCGATGGTGTC 8003363 >seq3641 Length=30143674 Score = 107 bits (118), Expect = 4e-18 Identities = 114/149 (77%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || |||||||| | |||||| | ||||| || Sbjct 24919884 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCC 24919825 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || | || || || || || ||||| || || ||||| || |||||||| Sbjct 24919824 AGCTGTTTGCCCCCAAATATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 24919765 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||||| ||||| ||||| |||||||| Sbjct 24919764 ATTTTGGCTTTGACATTCTC-ATGGTGTC 24919737 >seq4347 Length=47401472 Score = 104 bits (114), Expect = 5e-17 Identities = 113/149 (76%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || || || |||| || || |||||||| Sbjct 19988763 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAGGGTGTGCCCATCTTTC 19988822 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||| || || ||||| || | || || || || ||| ||||||| |||||||| Sbjct 19988823 AGCTGCTCCCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA-TGCCTTCCTTGTCTTGG 19988881 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || ||| |||||| |||||||||||||| Sbjct 19988882 ATCTTTGCCTTGACATTCTCAATGGTGTC 19988910 Score = 100 bits (110), Expect = 6e-16 Identities = 147/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || || ||||| || | || || | ||||||| ||||| Sbjct 19988540 GTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCATCCATCTTACAGCTG 19988599 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| | || ||||| || | || || || || || || ||||| ||||||| || || Sbjct 19988600 CTTCCTAGCAAAGATCAGCCTCTGCTGATCAGGGGGTATACCTTCCTTGTCTTCGATCTT 19988659 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 | |||||| |||||||||||||| ||| || || | ||||| | ||||| || Sbjct 19988660 TGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTTGAGGGTGATGGTCTTGCC 19988716 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | ||||| Sbjct 19988717 AGTCAGGGTCTTCACAAAGATCTGCAT 19988743 >seq1989 Length=108143057 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||||||||| || || ||||| || | || || | ||| |||| |||||||| || Sbjct 8822879 GTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCACCTTCCAGCTGCTTCCCA 8822820 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| || | || || || || || |||||||| |||||||| || ||| |||| Sbjct 8822819 GCAAAGATCAGCCTCTGCTGATCAGGGGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTG 8822760 Query 195064 ACGTTCTC 195071 || ||||| Sbjct 8822759 ACATTCTC 8822752 >seq1230 Length=159902609 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| || ||||||||||| |||||||| ||||| || | | | | || Sbjct 126082694 AGTCTCAACACAAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGATAAACTACTT 126082753 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || || || |||| ||| || || |||||| ||| Sbjct 126082754 CCATCTTCCAGTTGCTTGCCGGCAAAAATCAGTCTTTGCTGCTC---AGGAATTTTTTCC 126082810 Query 195043 TTGTCTTGAATTTT 195056 || || ||||| || Sbjct 126082811 TTATCCTGAATCTT 126082824 >seq3188 Length=83067054 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/226 (69%), Gaps = 13/226 (6%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||||||| ||||| ||||||||||||| |||||||| |||| || | |||| Sbjct 23023446 GAGTCTCAACACAAGAAGAAGAGTGGACTCCTTTTGAATGCTGTAGTC----AAAGTTTG 23023391 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| || |||||||| || || || || |||| ||| ||||| || ||| | | ||| Sbjct 23023390 TCCATCATCCAGCTGCTTGCCAGC-AACATCAGTCTTTGCTGGTCAGGTGGATTCCATTC 23023332 Query 195042 TTTGTCTTGAATTTTTTGCTTGAC--GTTCTCA-----ATGGTGTCCGAACTTTCCACTT 195094 | ||||| || || ||| || |||||| || || | | | ||| || | Sbjct 23023331 -CTATCTTGGATCTTGGCCTTTACATTTTCTCAGATACATTGTATTCAAGAGTTCAACCT 23023273 Query 195095 CAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | |||||||| || | ||||| Sbjct 23023272 GGAGAGTGATAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCAT 23023227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109372455441026