Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3640 457 1e-123 seq1230 123 3e-23 seq1231 120 3e-22 seq702 102 9e-17 >seq3640 Length=31815103 Score = 457 bits (506), Expect = 1e-123 Identities = 668/938 (71%), Gaps = 10/938 (1%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || || ||||||| | ||||||||||||| ||| || || ||| ||||||||| Sbjct 24467949 TTAGAAGCCAGCATCCAAGGTAAAAGAATTCTCT--ATTGGACTTGACATCACTCCCATT 24468006 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||||||| | ||||| || |||||||| ||||| ||||| || | || ||| Sbjct 24468007 CTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGCAATATTC 24468066 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| ||||||||||||| ||| | | | || | || || | ||| | | Sbjct 24468067 TCCATAAAGTCAAATGGATTTTCTACTCTGAACACCTTGCTAAAACCCAGTTCCAGCATA 24468126 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCA--CAATTCATTCCTATTA 18847 ||||| || || ||||||| ||| || ||||| || || |||||||| || || | Sbjct 24468127 AGTCTGTCAGCCACAAATTCAATGTACTGCTTCAT--TAACATGCAATTCATCCCAATGA 24468184 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TA 18906 || ||||| | || || || || || || | | ||| | || || | ||||| | Sbjct 24468185 GCTTCACAGGCAAGGCGTCAGTGAGGAACTCCTCCTGTATCCTAACAGCAT-TGATAATT 24468243 Query 18907 ATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCA 18966 || | ||||| | || || | || || ||||| ||||||| || ||| Sbjct 24468244 ATTTCTTTTACTCTCTGCTCCGACGGTTTATGTACCAGGTGTTTGAACATCAGGCAGGCA 24468303 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 || ||||| |||| ||||| ||||| || || | |||||| |||||||| | |||||| Sbjct 24468304 AAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGC 24468363 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086 |||||||||| ||| || | ||||||||| || ||||| || ||||||||||| || ||| Sbjct 24468364 ATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCT 24468423 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCAT 19146 || ||||| ||||| || || | | ||||||||| |||| || || | |||| | Sbjct 24468424 TCCACTGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCTAA 24468483 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 || |||||||| |||||||| || ||||| ||||| || | || | ||| || ||| Sbjct 24468484 CGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTAAATGGCATTGAAGAGA 24468543 Query 19207 TACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 || | || | | |||||||| || | ||| || | | ||| |||||||| ||| Sbjct 24468544 TATTCCCTTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAA 24468603 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 || || ||||| || || || || || || || ||||| | || ||||| ||||| ||| Sbjct 24468604 TGCATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCCTCTGTAATCTGAACT 24468663 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 || | ||||| || ||||| |||||||| ||||| ||||||||||||||||| || Sbjct 24468664 TCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTAGCTGCAAAGAAA 24468723 Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATA 19446 || | ||||| || |||| ||| ||||| | | | | | ||| | | ||| Sbjct 24468724 GCCAGAACATGCGATATGAAATATTTCTCATCAGGCTTCAGAGCTTCCCAGTGCTGAATG 24468783 Query 19447 TCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATG 19506 || || || | ||| || || | | |||||||| |||||||| ||||| |||||||| Sbjct 24468784 TCCTTGGAAAGATCCACCTCCTTGGCCGTCCAAAAGGAAGCCTCAGCTTTCTTATACATT 24468843 Query 19507 TTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | ||| |||||| | |||| |||||||| ||| |||| Sbjct 24468844 TGCCAAATATCATGGTATTCGATAGGAAAGATAGCAAA 24468881 >seq1230 Length=159902609 Score = 123 bits (136), Expect = 3e-23 Identities = 116/146 (79%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| ||||||||| Sbjct 150442377 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCATT 150442434 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||||||| | ||||| || |||||||| ||||| ||||| || | ||| ||| Sbjct 150442435 CTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTC 150442494 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 150442495 TCCATAAAGTCAAATGGATTTTCTAC 150442520 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||||| | || ||||||||||||| ||| | Sbjct 150440333 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 150440392 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 150440393 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 150440452 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 150440453 CTACAACCCGTTCTCC 150440468 Score = 107 bits (118), Expect = 2e-18 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||| | || ||||||||||||| ||| | Sbjct 150431939 CCTCATCTCTGCTAATAAGTTCATTG--AAATGTGGAGCCGGGCATCAGTCCTCGTTTCT 150431996 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 150431997 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 150432056 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 150432057 CTACAACCCGTTCTCC 150432072 >seq1231 Length=116334831 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | |||||||| || ||||| || ||| Sbjct 53055245 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 53055304 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 53055305 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 53055364 Query 19105 ACTAGTCTTTCTCC 19118 |||| |||||| || Sbjct 53055365 ACTACTCTTTCCCC 53055378 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 19334 AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393 |||||||| |||||||||||||| || ||||||||||| ||||| ||||| ||||| | Sbjct 53060393 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCGAAAAAGGCTAAGA 53060449 Query 19394 CATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAG 19453 || ||||||| || |||||||| | | | ||||||| | | | ||| || | Sbjct 53060450 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGTTTATTCCAGTGAGGGAGATCCTTTG 53060509 Query 19454 ATAAATCTAC 19463 |||| || || Sbjct 53060510 ATAAGTCGAC 53060519 >seq702 Length=116768492 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || | Sbjct 56440509 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 56440568 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || |||||||| || |||||||| | | || | Sbjct 56440569 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 56440628 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || |||||||| |||||||||| ||| || | ||| || || Sbjct 56440629 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGG 56440677 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || || || || || ||||| || || Sbjct 56442966 TGAAATTCTCCTGACAAGACTCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATGGAC 56443025 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | || ||||||||||| || |||||||| | |||| | ||| || Sbjct 56443026 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGAGCAATAAGTAAACTG 56443085 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 56443086 TTTCTTATACCATA 56443099 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/161 (73%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 || ||||| | || || || |||| ||||| ||| ||||| ||||| || | | Sbjct 5323671 AGGTGTTTGACCACCAGGCAGGCAAG-TCACAGCGTAAACCCTCATCTCTGCTACTAAGC 5323729 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 ||||| |||| ||| | || ||||||||||| | ||| || | |||||| || || ||| Sbjct 5323730 TCATTGGAAAGTGTGAGGCCGGGCATCAGTCCCCCTTTCTTGAGCCAGAACATCGATGCA 5323789 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGC 19103 ||| || | |||||| || ||||| ||||| ||||| || Sbjct 5323790 GCTGAACCGGGAAAGAAGATGCCTTCCACTGCGGCAAAGGC 5323830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562054851607920