Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_016447.1 Length=219474 Score E Sequences producing significant alignments: (Bits) Value seq233 96.9 5e-15 >seq233 Length=141296404 Score = 96.9 bits (106), Expect = 5e-15 Identities = 172/247 (70%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 197401 CTAAATATCTCAAACGCGACAGATATTGAGAACGTGGCTTGGAACGGCCCTAAAATCGCT 197460 ||||| |||||| | | ||||| |||||| || | | |||| || ||||||| | || Sbjct 115787183 CTAAACATCTCAGAAGACACAGAGATTGAGCACATCACCTGGAGTGGTCCTAAAACCACT 115787124 Query 197461 -TTAGCATTTGCCAATCCTAAAG---ACGTTACCATAATGGATAAAAGCTACCAGGGTCG 197516 ||| || || | || ||| | | ||| | |||| ||||||||||||||||| Sbjct 115787123 CTTATTATA-GCATACCCCGAAGGAAAGATAACCCTTGTGGACAAAAGCTACCAGGGTCG 115787065 Query 197517 TGTCAACATTAGCCAAACCAACTACTCTTTGTGCATTAGGAACCTGACCGTGAATGATGC 197576 | |||| ||| | || || ||| ||| || ||| |||| ||||| ||||| Sbjct 115787064 ACTAAACACCAGC---TGGAGTTATTCCCTGTACATCAGCAACTTGACTGTGAAAGATGC 115787008 Query 197577 TGGTTCGTATAAGGCCCAAATTAACAAAAATAATTCCCAAGTCACCACCAAGGAGGAATT 197636 || | || || ||||| || ||| |||| ||||| |||||||||| || ||||||| Sbjct 115787007 AGGAACTTACAAAGCCCAGATAAACCAAAAGAATTCTGAAGTCACCACAGAGAAGGAATT 115786948 Query 197637 TACTCTG 197643 || ||| Sbjct 115786947 CACCCTG 115786941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 702121407429920