Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq233 165 1e-35 >seq233 Length=141296404 Score = 165 bits (182), Expect = 1e-35 Identities = 231/324 (71%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| ||||| | ||| || |||||||| || || |||||||| ||||| Sbjct 116032646 GTTTCACAAAACAGCTTAATCCCATCGACGGTGAATGGAGTTCTGGGGGAGTCAGTAACT 116032705 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || | || | ||||| | || ||||| ||| |||||||||||| | ||| || Sbjct 116032706 CTTATCTTGAAGTTTCCTGAAGGAAAGAAGGTCAGTGCCATCACCTGGCTTTGCAATGGA 116032765 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || |||||||| || | || ||||| || || ||||| | || || Sbjct 116032766 ACATCTATCGCCTTCATAAATCTAAATGAAGCCAAAAGTCCATTCATCCAAGTGACTGAT 116032825 Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117 || ||| | | |||||||| ||| |||| |||||||||||| | || || |||||||| Sbjct 116032826 CCAAAATGGAGAAAGCGACTGAACCTCACCCAGTCCTACTCCTTGCATCTCAGCAACCTG 116032885 Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177 ||||| |||||| || || |||||||||| |||| || | ||| || | | || Sbjct 116032886 ACGATGGCAGACACAGGATCTTACAGTGCCCAGATGACCACAGAGGCCTTTGCAACACTT 116032945 Query 2178 TCCAGCTACACGCTGAGGATCTTC 2201 ||||||||||| |||||||||||| Sbjct 116032946 TCCAGCTACACTCTGAGGATCTTC 116032969 Score = 165 bits (182), Expect = 1e-35 Identities = 231/324 (71%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| ||||| | ||| || |||||||| || || |||||||| ||||| Sbjct 124698636 GTTTCACAAAACAGCTTAATCCCATCGACGGTGAATGGAGTTCTGGGGGAGTCAGTAACT 124698695 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || || || | ||||| | || ||||| ||| |||||||||||| | ||| || Sbjct 124698696 CTTACCTTGAAGTTTCCTGAAGGAAAGAAGGTCAGTGCCATCACCTGGCTTTTCAATGGA 124698755 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || |||||||| || | || ||||| || || ||||| | || || Sbjct 124698756 ACATCTATCGCCTTCATAAATCTAGATGAAGCCAAAAGTCCATTCATCCAAATGACTGAT 124698815 Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117 || ||| | |||||||| ||||| || |||||| ||||| | || || |||||||| Sbjct 124698816 CCAAAATGGAAAAAGCGACTGAACTTTACCCAGTCCAACTCCTTGCATCTCAGCAACCTG 124698875 Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177 ||||| |||||| || || |||||||||| ||| || | |||||| | || | || Sbjct 124698876 ACGATGGCAGACACAGGATCTTACAGTGCCCACATGACCACAGAGACCTCTGTAACACTT 124698935 Query 2178 TCCAGCTACACGCTGAGGATCTTC 2201 ||||||||||| |||||| ||||| Sbjct 124698936 TCCAGCTACACTCTGAGGGTCTTC 124698959 Score = 141 bits (156), Expect = 1e-28 Identities = 182/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 2205 AAACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAG 2264 ||||||| |||||| | | | || |||||| |||| || |||| ||| ||||||| Sbjct 116035491 AAACTGAGGAACATAAACATTACCAGCCACAGTGAACTATCCGGGAATAGGACCTGCGAG 116035550 Query 2265 ATCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCC 2324 || || |||||||| || || ||| |||| ||||||| |||| |||| ||| ||||| Sbjct 116035551 ATACACCTGACCTGCTCAGTGGAGAATCCAGATGACAATGTCTCATTCAGGTGGCAGGCC 116035610 Query 2325 TTGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGC 2384 | || || | |||| | || || |||||||| | ||||||||||||| || | Sbjct 116035611 TCAGGAAACATACTTCGAAAGGAACCGAACCTCACTATCTCCTGGGACCCCCAAAATTCC 116035670 Query 2385 AGTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTC 2444 ||||| || || ||||| ||||| || || ||| | | ||||| | || | | | ||| Sbjct 116035671 AGTGAACAAAAATACACCTGCATAGCTGAGAACCCCATTGGCAATTTATCCTCCTCTGTC 116035730 Query 2445 TCGGCCCAGAA 2455 || |||||||| Sbjct 116035731 TCTGCCCAGAA 116035741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629222804544880