Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3640 306 4e-78 seq1230 111 2e-19 seq1231 107 2e-18 >seq3640 Length=31815103 Score = 306 bits (338), Expect = 4e-78 Identities = 618/900 (69%), Gaps = 24/900 (3%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| ||||||||| | |||||||| || |||| |||| || || || || |||||||||| Sbjct 24467994 CATCACTCCCATTCTCTGATATTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 24468052 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACA 36988 | |||| ||||| |||||||| ||||||||||| | || | | | | | ||| | Sbjct 24468053 CCAGTGCAATATTCTCCATAAAGTCAAATGGATTT--TCTACTCTGAACACCTTGCTAAA 24468110 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCAT- 37047 | |||| || ||| || || || |||||||| ||||| | ||||| ||| Sbjct 24468111 ACCCAGTTCCAGCATAAGTCTGTCAGCCACAAATTCAATGTACTGCTTCATTAA--CATG 24468168 Query 37048 -AGTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTAT 37105 | || || ||||| || || || || | || || ||| ||| | | | ||| | Sbjct 24468169 CAATTCATCCCAATGAGCTTCACAGGCAAGGCGTCAGTGAGGAACTCCTCCTG-TATCCT 24468227 Query 37106 TACAGCATCTTTAACTATATTAACAATAACT-TCT--TCAGTTGGGGGATATTTTAAATA 37162 ||||||| ||| ||| | | | ||| ||| || | || || | | | Sbjct 24468228 AACAGCATTGATAATTATTT---CTTTTACTCTCTGCTCCGACGGTTTATGTACCAGGTG 24468284 Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | || ||||| ||||| |||||||| |||||||| || || | |||||| Sbjct 24468285 TTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATT 24468344 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||||| || | || ||||| | |||| ||| || | ||| ||||||| ||||||||| Sbjct 24468345 GGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGA 24468404 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 ||||||||||| || ||||| ||||| ||||| ||||||| |||| || | || | Sbjct 24468405 ACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGC 24468464 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 | || |||| | | |||||||||||| || ||||| || || Sbjct 24468465 CTCTTTGTCCCCAATCTAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT 24468524 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 || ||| || || |||||| | | |||||| |||| | || ||||||||||| || Sbjct 24468525 TTAAATGGCATTGAAGAGATATTCCCTTTCTTTGGAATCTTTAATGTAAGTATCAATGAG 24468584 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 | ||||||||||||||| || || ||||| || || || || || ||||| ||||| | Sbjct 24468585 GAGACTATACATTTCAGAATGCATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCG 24468644 Query 37523 AGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCC 37581 ||| || | |||| ||||| || | ||| | || | ||||||||||| ||||| | Sbjct 24468645 AGCCTCTG-TAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGC 24468703 Query 37582 CATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA--TTTGA 37639 |||||||||||||||||||||| ||||||| ||| |||| | | |||||| || | Sbjct 24468704 CATCACTAGCTGCAAAGAAAGCCAGAACATGCGATATGAAATATTTCTCATCAGGCTTCA 24468763 Query 37640 TAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACT 37699 | || ||| | | ||| || || || | ||| || || | | |||||||| Sbjct 24468764 GA--GCTTCCCAGTGCTGAATGTCCTTGGAAAGATCCACCTCCTTGGCCGTCCAAAAGGA 24468821 Query 37700 TGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 ||| || |||||||| ||||||||||| | || || ||||| || |||| Sbjct 24468822 AGCCTCAGCTTTCTTATACATTTGCCAAATATCATGGTATTCGATAGGAAAGATAGCAAA 24468881 >seq1230 Length=159902609 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | || ||||| | |||| ||| || Sbjct 150440335 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 150440394 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||||| ||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 150440395 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 150440454 Query 37320 ACAA 37323 |||| Sbjct 150440455 ACAA 150440458 Score = 100 bits (110), Expect = 3e-16 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||| || | || ||||| | |||| ||| || Sbjct 150431941 TCATCTCTGCTAATAAGTTCATTG--AAATGTGGAGCCGGGCATCAGTCCTCGTTTCTTG 150431998 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||||| ||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 150431999 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 150432058 Query 37320 ACAA 37323 |||| Sbjct 150432059 ACAA 150432062 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/94 (84%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| ||||||||| | |||||||| || |||| |||| || || || || |||||||||| Sbjct 150442422 CATCACTCCCATTCTCTGATATTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 150442480 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 150442481 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 150442514 Score = 84.2 bits (92), Expect = 3e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 37440 TCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCT 37499 ||| | || ||||||||||| || | ||||||||||||||| || || ||||| || || Sbjct 150438694 TCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 150438753 Query 37500 ATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT-TGAACATC 37543 || || || ||||| ||||| | |||||| | |||| ||||| || Sbjct 150438754 ATTTGGAAGCCATAGAAACAGCGAGCTTCTG-TAATCTGAACTTC 150438797 >seq1231 Length=116334831 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||| ||||| | |||||| || | Sbjct 53055243 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 53055302 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 53055303 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 53055362 Query 37318 CTAC 37321 | || Sbjct 53055363 CCAC 53055366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592259952395120