Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1230 365 4e-96 seq3188 152 4e-32 seq1231 122 7e-23 seq702 114 1e-20 seq233 111 1e-19 seq4546 100 2e-16 seq1789 93.3 3e-14 seq2029 87.8 1e-12 seq1989 87.8 1e-12 >seq1230 Length=159902609 Score = 365 bits (404), Expect = 4e-96 Identities = 494/687 (72%), Gaps = 1/687 (0%) Strand=Plus/Minus Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825 |||||||| ||| || || | || |||||| |||||||||| || | ||||| |||||| Sbjct 40602514 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGAATCTTCAGCGGCTCGATGTGATTCAGGTA 40602456 Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885 | ||| || ||||||| || || ||||| || || || | |||| ||||| ||| || Sbjct 40602455 AATGTGTGCATCTCCCAAAGTATGAACAAAGTCACCTGGCTTGAGCCGGGTGATGTGCGC 40602396 Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945 |||||||||||||| || | ||||||||||||||| || || | || || |||||||| Sbjct 40602395 GATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAATGGCATGCCCAGGCCCATGTC 40602336 Query 29946 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 30005 ||||||| |||||| ||||| || || ||||| ||||| |||||| ||||| || | Sbjct 40602335 TCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTCCACCACGTAGAACTGGCAGAG 40602276 Query 30006 GGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGAT 30065 | ||| ||||| || || ||||| || | ||||| || ||||| || |||| ||| Sbjct 40602275 GACGTGACACGGGGGCAGCGCCATCAGAGGGAGATCTTTTGGATTCCAAGCACACATGAT 40602216 Query 30066 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 30125 ||| | ||||| || |||| | | ||||| || | | |||||||| || || || Sbjct 40602215 GATTCTTCTGTCGTCAGGGTGGGTTTTGATGGTATCGATCACTTTTTGCAGTTGGTCAAC 40602156 Query 30126 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTG 30185 || || || || |||| ||| || |||| || || || |||||||||||||| Sbjct 40602155 TCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTG 40602096 Query 30186 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30245 ||| || || || || |||| ||| || ||| | ||| ||| ||| |||| Sbjct 40602095 GAAGCCATAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTAGAGAATCCCAGGCCATCCAG 40602036 Query 30246 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 30305 |||||||| ||| || ||||| ||||||||||| || |||||| || || ||||| | Sbjct 40602035 AAAGTCTCGGGATCCATTGGCATCCCAGATCTTCACTCCCTTCGAAGACAGTTCTTTAGC 40601976 Query 30306 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30365 ||||||||| || ||| |||||||||| |||||||| || ||||||| || || Sbjct 40601975 GTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAACACATG 40601916 Query 30366 CTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAACAC 30425 ||||| || || || ||||| | | | |||| ||| ||||| || ||||| Sbjct 40601915 TTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCAGGCCGAACAC 40601856 Query 30426 GGACAAGACTCCCGTGCCCGTCCTGTC 30452 ||| | || |||||||| | ||| Sbjct 40601855 CTACAGGGTGCCGGTGCCCGTGCGGTC 40601829 >seq3188 Length=83067054 Score = 152 bits (168), Expect = 4e-32 Identities = 132/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 |||||||||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 66355481 AGCCCGGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAACGGC 66355422 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| ||||||| |||||| ||||| || || ||||| ||||| | Sbjct 66355421 ACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTCCACC 66355362 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | || ||| ||||| || || ||||| || Sbjct 66355361 ACGTAGAACTGGCAGAGGGCGTGACACGGGGGCAGCGCCATCAG 66355318 Score = 100 bits (110), Expect = 2e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| || || || ||||||||||||||||| || || || || |||| ||| Sbjct 66352269 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 66352210 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||| | ||| ||| ||| |||| |||||||| ||| || ||||| || Sbjct 66352209 CCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCCAGAAAGTCTCGGGATCCATTGGCATC 66352150 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||||||||| || |||||| || | ||||| | ||||||||| || Sbjct 66352149 CCAGATCTTCACTCCCTTCGAAGACAATTCTTTAGCGTTTGTGGATCC 66352102 >seq1231 Length=116334831 Score = 122 bits (134), Expect = 7e-23 Identities = 186/260 (72%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||| ||||| || || || || || || || || || ||||| || || ||||| | Sbjct 6981242 ATGGGCTCCTTGTGGAGGTTCCTTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTT 6981183 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| | |||| ||||| ||||||||||| ||||| || ||||| ||||||| || Sbjct 6981182 TAAAGGTCGACTCTTCTCGGGAATGGAGAACCAGGTCTTCCTGCCCATAATCACCAGATT 6981123 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA-AGGCTCGAAAGTGTTTAAAATCTTTGC 112258 ||| |||||| |||||||| || | ||||| || |||| | | || || || | Sbjct 6981122 CTGTTTGCCTTCTACTGAAGAGGTGGTGGTCATTTTCTGGAAA-TACCTGAATTCATTCC 6981064 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 ||| || |||| ||||| || ||||| || || ||||||||| ||||| || Sbjct 6981063 TGAGT------GGGGGCCAGGGCAGGTCCCCGTTCTTGCCAATGCCCATGTTCTGG-GAC 6981011 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | |||||| Sbjct 6981010 ACAGCGACGATGCAGTTCAG 6980991 >seq702 Length=116768492 Score = 114 bits (126), Expect = 1e-20 Identities = 176/249 (71%), Gaps = 8/249 (3%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || | || || || || || ||||| || || |||||| | Sbjct 58908486 ATGAGCTCCTTGTGGAGGTTCCTAGAGTTCTCTACTAAGAACTACATTAATTCTGTCTTT 58908545 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| | ||||| ||||||| || Sbjct 58908546 TAAAGGTCAATTCTTCTCAGGAATGGAGAACCAGGTCTTCTTGCCCATAATCACCAGATT 58908605 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 112259 ||| |||||| |||||||| || | ||||| | | || | || || || || | Sbjct 58908606 CTGTTTGCCTTCTACTGAAGAGGTGGTGGTCATTTTTTGGAAATACTTGAATTCATTCCT 58908665 Query 112260 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACA 112318 ||| || |||| || || || ||||| || || ||||||||| ||||| ||| Sbjct 58908666 GAGT------GGGGGCCAGGGGAGGTCCCCGTTCTTGCCAATGCCCATGTTCTGG-GACA 58908718 Query 112319 CGGCCACGA 112327 | || |||| Sbjct 58908719 CAGCGACGA 58908727 >seq233 Length=141296404 Score = 111 bits (122), Expect = 1e-19 Identities = 162/226 (72%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 30163 TCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC-CCT 30221 ||||| || | ||||||||||||| || || || || |||| | ||| ||| ||| Sbjct 68914605 TCTGCCCCATCACGCCTCCACTGGAAGCCATAAACTGGGCCCA---CACCCCGTTCTCCT 68914661 Query 30222 GTGCT--CGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30279 || | ||| || | | |||||| ||||| ||| | |||||| |||||||| || Sbjct 68914662 CTGGTGGAGAACACCAGCCTATCCAAAGAGTCTTGGGATCTGTTGGCATCCCAGATTTTC 68914721 Query 30280 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 30339 || ||||| || || ||||| ||||||||| | || ||| || ||||||| |||| Sbjct 68914722 ACTCCCTTGGAAGACAGTTCTTTAGAGTTTGTGAATCCCTTGATAAAGCACAGCAACTCC 68914781 Query 30340 TCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 |||| || ||||||| || || || ||||| || || || |||| Sbjct 68914782 TCCAAAACACCCTTCCAGAACACACTTTTGGTTGTCAGCAGAGGAA 68914827 Score = 105 bits (116), Expect = 5e-18 Identities = 174/249 (70%), Gaps = 8/249 (3%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || | || || || || || ||| | || || ||||| | Sbjct 132920430 ATGAGCTCCTTGTGGAGGTTCCTCGAGTTCTCTACTAAGAACTGCATTAATTCTGTCCTT 132920371 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| || ||||| ||||||| || Sbjct 132920370 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTGCCCATAATCACCAGATT 132920311 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 112259 ||| |||||| |||||||| || | ||||| | | || | | || || || | Sbjct 132920310 CTGTTTGCCTGCTACTGAAGAGGTGGTGGTCATTTTTTGGAAATACTGGAATTCGTTCCT 132920251 Query 112260 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACA 112318 || ||| |||| | ||| || ||||| || || ||||||||| ||||| ||| Sbjct 132920250 GAG------CGGAGGCCAGGCCAGGTCCCCGTTCTTGCCAATGCCCATGTTCTGG-GACA 132920198 Query 112319 CGGCCACGA 112327 | || |||| Sbjct 132920197 CAGCGACGA 132920189 Score = 104 bits (114), Expect = 2e-17 Identities = 223/326 (68%), Gaps = 8/326 (2%) Strand=Plus/Plus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 ||||||||| ||| | || || |||||| |||| || || | | ||||| |||| Sbjct 68913438 TGGGAAAGG-TCTTGATTCTTGCTGAAGCTGAATCTTTAGTGGCCCAATGTGATTTAGGT 68913496 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | | || || | ||||| || | ||||| || | || | ||| || || | ||| | Sbjct 68913497 AAATATGTGCATTTCCCAAAGTATT-ACAAAGTCACTGGGCTTTAGACCAGTAATGTGTG 68913555 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | |||||||| || || || | |||||||||||||| || | | || | || |||| Sbjct 68913556 CTATCATGTATGTAAGCAGGGCATAGCTGGCGATGTTGAACTGCATGCCAAAGCCTATGT 68913615 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC-TCCGTCGCTCACGTAAAACTGACAC 30003 | || |||| |||||| | || || ||||| || || | ||| || ||||| || Sbjct 68913616 CTCCTGACCACTGGTACAAACAGCAGGACAGCTCATCATTCAC-CACATAGAACTGGCAG 68913674 Query 30004 ATGGTGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACA 30061 | || |||||| |||| || | ||| |||| || |||| || |||| || |||| Sbjct 68913675 AGGGCATGGCACAGAGGCAGCGACATCAGAGGAAGAA--CTTTTGGATTCCCAGCACACA 68913732 Query 30062 CGATGATGCGCCTGTCTTCTGGGTTG 30087 |||||| | ||||| | |||||| Sbjct 68913733 TGATGATTCTTCTGTCATGAGGGTTG 68913758 >seq4546 Length=144923918 Score = 100 bits (110), Expect = 2e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || | || || || || || || || ||||| || || ||||| | Sbjct 48099379 ATGAGCTCCTTGTGGAGCTTCCTTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTT 48099320 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| || ||||| ||||||| || Sbjct 48099319 TAAAGGTCAATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTGCCCATAATCACCAGATT 48099260 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGT 112229 ||| |||||| |||||||| || | ||| Sbjct 48099259 CTGTTTGCCTTCTACTGAAGAAGTGGTGGT 48099230 >seq1789 Length=108226025 Score = 93.3 bits (102), Expect = 3e-14 Identities = 178/259 (69%), Gaps = 9/259 (3%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||| | || || || || || || || || || ||||| || || |||| | Sbjct 65826846 ATGAGCTTCTTGTGGAGGTTCCTTGAGTTCTCTACTAAGAACTACATTAATTTTGTCCTT 65826787 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | | ||| | |||| || || ||||||||||| |||||||| ||||| ||||| | || Sbjct 65826786 TAAAAGTCGACTCTTCTCAGGAATGGAGAACCAGGTCTTTCTGCCCATAATCACAAGATT 65826727 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 112259 || |||||| |||||||| || | ||||| | | || | || || | || | Sbjct 65826726 TTGTTTGCCTTCTACTGAAGAGGTGGTGGTCATTTTTTGGAAATACTTGAATTTATTCCT 65826667 Query 112260 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACA 112318 ||| || |||| ||||| || ||||| || || ||||||||| ||||| ||| Sbjct 65826666 GAGT------GGGGGCCAGGGCAGGTC-CCGTTCTTGCCAATGCCCATGTTCTGG-GACA 65826615 Query 112319 CGGCCACGATACCGTTCAG 112337 || ||||| | ||| || Sbjct 65826614 TAGCGACGATGCAGTTTAG 65826596 >seq2029 Length=6895 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || || || ||||| || || ||||| | | ||||| | |||| ||||| Sbjct 6279 TTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGACTCTTCTCGGGA 6220 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| || ||||| ||||||| ||||| |||||| Sbjct 6219 ATGGAGAACCAGGTCTTCCTGCCCATAATCACCAGATTCTGTTTGCCT 6172 >seq1989 Length=108143057 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || || || ||||| || || ||||| | | ||||| | |||| ||||| Sbjct 68976380 TTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGACTCTTCTCGGGA 68976439 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| || ||||| ||||||| ||||| |||||| Sbjct 68976440 ATGGAGAACCAGGTCTTCCTGCCCATAATCACCAGATTCTGTTTGCCT 68976487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408579363352694