Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq4546 89.7 1e-13 >seq4546 Length=144923918 Score = 89.7 bits (98), Expect = 1e-13 Identities = 180/267 (67%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| | ||| || ||| ||||||| | || || || || || || | | | Sbjct 18169948 TTCCTTCTGGGTTTTACGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCCAAACATTTTA 18169889 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||| | || |||||||| || ||| ||| | ||| || || ||||||||||| | | Sbjct 18169888 TAGATATAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTGCTGT 18169829 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 ||||||| || | || ||| | | || ||||||| ||||||| ||| | |||| Sbjct 18169828 CTAATTTTGGCAAAGAGAAGTTTGAAGTCAAAAAAGGTGATCGGATTGCGCAGCTCATTT 18169769 Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGG 1197 ||||| | | ||| |||| | || ||| | || || || | || ||| Sbjct 18169768 GTGAACGGATTTTTTATCCAGAAACAGAAGAAGTTCAAGTTTTGGATGACACTGACAGGA 18169709 Query 1198 GTTCTGCAGGATTTGGGTCTACCGGAA 1224 |||| | ||| ||||| ||||| |||| Sbjct 18169708 GTTCAGGAGGTTTTGGTTCTACTGGAA 18169682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138668955531768