Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 seq2763 86.0 5e-12 seq3641 82.4 6e-11 seq233 82.4 6e-11 >seq1 Length=114275543 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| |||||||| ||||| ||||| | | | || | || Sbjct 8597706 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 8597647 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | ||||| || ||||| ||||||| || ||||| | |||| || ||||| || Sbjct 8597646 TTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 8597587 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | | || || | || || || | || || || Sbjct 8597586 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACTTCAAGAGTGATAGT 8597527 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| || | |||||||| |||||||||||| || Sbjct 8597526 TTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCTTG 8597490 >seq2763 Length=65901067 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| |||||||| ||||| ||||| | | | || | || Sbjct 824243 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 824302 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | ||||| || ||||| ||||||| || ||||| | |||| || ||||| || Sbjct 824303 TTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 824362 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | | || || | || ||||| | | || || Sbjct 824363 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGGGATAGT 824422 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||||| || |||||||| ||||||||||||||| Sbjct 824423 CTTTCCTGTACGGGTTTTTACGAAAATCTGCATCGTG 824459 >seq3641 Length=30143674 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || || | ||||| || || ||| |||||| || || |||||||| || Sbjct 24919903 GCCACCTCTCAGACGAAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGA 24919844 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| ||| || || |||||||||| ||||| || || | || Sbjct 24919843 AAGAGTGCGGCCATCCTCCAGCTGTTTGCCCCCAAATATCAGACGCTGCTGGTCAGGTGG 24919784 Query 48659 AACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 24919783 GATGCCCTCCTTGTC 24919769 >seq233 Length=141296404 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/221 (68%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| || ||||| ||||| ||||| | | | || | || Sbjct 109921676 CAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 109921735 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | ||||| || ||||| ||||||| || ||||| | |||| || || || || Sbjct 109921736 TTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 109921795 Query 48674 G----CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAA 48729 || ||||| |||||| | | | || || | || ||||||| || | Sbjct 109921796 CTGGCCTTATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCCAGAGTGA 109921855 Query 48730 TCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 | || ||||| || | |||||||| |||||||||||| || Sbjct 109921856 TAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCTTG 109921896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380901953525994