Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3833 187 5e-42 seq3640 176 8e-39 seq1789 140 6e-28 seq233 93.3 8e-14 seq702 91.5 3e-13 >seq3833 Length=15088824 Score = 187 bits (206), Expect = 5e-42 Identities = 187/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 3640138 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 3640197 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || ||| | ||||| || ||||| || | ||||||| |||||| Sbjct 3640198 TCCCGGAGGAGGCCGGCAGTACTCGACAGCCCGGCGTTCTCGGCCTTGAGCGTCTTCACC 3640257 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| || ||||| |||| Sbjct 3640258 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTAGTGGCCGCCAGC 3640317 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || Sbjct 3640318 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 3640377 Query 241625 GAC 241627 ||| Sbjct 3640378 GAC 3640380 >seq3640 Length=31815103 Score = 176 bits (194), Expect = 8e-39 Identities = 549/844 (65%), Gaps = 17/844 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| |||||||||||||| ||||| || |||| | || ||||| Sbjct 24468009 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGCAATATTCTC 24468068 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||| ||| || || || | | ||||| | | |||| ||||||||| Sbjct 24468069 CATAAAGTCAAATGGATTTTCTACTCTGAACACCTTGCTAAAACCCA---GTTCCAGCAT 24468125 Query 47959 GTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 | || || || | || ||||| | ||| | || ||||| || ||||| Sbjct 24468126 AAGTCTGTCAGCCACAAATTCAATGTACTGCTTCATTAACATGCAATTCATCCCAATGAG 24468185 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 ||| ||||| || | ||||| ||||||| || |||| || || | | || Sbjct 24468186 CTTCACAGGCAAGGCGTCAGTGAGGAACTCCTCCTGTATCCTAACAGCATTGATAATTAT 24468245 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | || || | ||| || ||||| | |||||| ||| | | || |||||| Sbjct 24468246 TTCTTTTACTCTCTGCTCCGACGGTTTATGTACCAGGTGTTTGA---ACATCAGGCAGGC 24468302 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| | ||| || || || || | ||| || || | ||||| || ||| ||||| Sbjct 24468303 AAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGG 24468362 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | | ||||||||||| |||| || ||||| ||||| ||||||||||| Sbjct 24468363 CATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCC 24468422 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC-C 48314 |||||||| || || || | | ||||| | | ||| | ||||| ||| Sbjct 24468423 TTCCACTGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCTA 24468482 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | | ||| ||||| |||||||||||||||| || |||||||| | ||||| ||||| Sbjct 24468483 ACGCAAG-GCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTAAATGGCATTGAAGA 24468541 Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCT 48431 | | | | || | || || || || | |||| || | ||||| | Sbjct 24468542 GATATTCCCTTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACT---ATACATTT 24468598 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 |||| |||| || || || || || ||||| || ||||| | ||||| | || Sbjct 24468599 CAGAATGCATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCCTCTGTAATCT 24468658 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 | |||||| | |||| ||||| || || ||||| ||||| ||||| ||| |||| Sbjct 24468659 GAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTAGCTGCAA 24468718 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT 48611 |||| || || ||||| | ||||| ||| | | | ||||| | |||| || Sbjct 24468719 AGAAAGCCAGAACATGCGATATGAAATATTTCTCATCAGGCTTCAGAGCTTCCCAGTGCT 24468778 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGT 48671 | | ||| ||| || ||||| || | | ||||| ||||| || ||||| || | Sbjct 24468779 GAATGTCCTTGGAAAGATCCACCTCCTTGGCCGTCCAAAAGGAAGCCTCAGCTTTCTTAT 24468838 Query 48672 ACAT 48675 |||| Sbjct 24468839 ACAT 24468842 >seq1789 Length=108226025 Score = 140 bits (154), Expect = 6e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 241416 GGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTC 241475 |||| | ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 108007530 GGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGAAGCCAGCT 108007471 Query 241476 CTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTT 241535 | | ||| | ||||||| ||||||||||||||| || |||| |||||| ||||| | Sbjct 108007470 CCGTGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCAGCT 108007411 Query 241536 TGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGA 241595 ||||| |||||| |||| ||| || | ||| || || || | ||| || |||||||||| Sbjct 108007410 TGCGCTTGCGGCACTTGGAGGCGGCGATGCGATTGCGCAGCCGCTTGCGCTCCGCCTTGA 108007351 Query 241596 TGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||| ||||| ||||||||||| || ||| Sbjct 108007350 TGCGATCCTGCGTGTCCATGTCGATGGGCGAC 108007319 >seq233 Length=141296404 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 14341448 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 14341389 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 14341388 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 14341329 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 14341328 ATGGGGGAC 14341320 >seq702 Length=116768492 Score = 91.5 bits (100), Expect = 3e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || || |||| || || ||||| |||||||||||| |||||| ||||||||||| ||| Sbjct 56452572 GTATATTCCACTATTTCTGTGCATAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 56452631 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || |||||||| ||||||||||| |||| || |||||| ||| Sbjct 56452632 -TTGCTCTTCCGATTACAGGAATCCTTATAGAGCATGTATGGGGTTCCTGTCTCTGTCTG 56452690 Query 213647 GGAC 213650 ||| Sbjct 56452691 AGAC 56452694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931443396139520