Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3640 159 6e-34 seq1230 91.5 3e-13 seq702 87.8 3e-12 >seq3640 Length=31815103 Score = 159 bits (176), Expect = 6e-34 Identities = 385/572 (67%), Gaps = 22/572 (4%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| | ||||| ||||| ||| | || ||||| ||| | ||| | ||| Sbjct 24468854 GATATTTGGCAAATGTATAAGAAAGCTGAGGCTTCCTTTTGGACGGCCAAGGAGGTGGAT 24468795 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCA 25591 || |||||||||| | |||| | ||||| | || || ||| | |||| | Sbjct 24468794 CTTTCCAAGGACATTCAGCACTGGGAAGCTCTGAAGCCT--GATGAGAAATATTTCATAT 24468737 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 | | || |||| ||||||||||| |||||| ||||| || || || || ||| Sbjct 24468736 CGCATGTTCTGGCTTTCTTTGCAGCTAGTGATGGCATAGTAAATGAAAACTTGGTGGAGC 24468677 Query 25652 GATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709 |||| | | ||||| ||| ||| ||||| |||||||| || ||||| || || Sbjct 24468676 GATTTAGCCAAGAAGTTCAGATTACA--GAGGCTCGCTGTTTCTATGGCTTCCAAATTGC 24468619 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA 25766 ||| ||||| |||| ||||| ||||| | || || || || ||||||| ||| Sbjct 24468618 CATGGAAAACATGCATTCTGAAATGTAT---AGTCTCCTCATTGATACTTACATTAAAGA 24468562 Query 25767 CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 | || || || || || |||||| | || || | |||||| ||| Sbjct 24468561 TTCCAAAGAAAGGGAATATCTCTTCAATGCCATTTAAACGATGCCTTGTGTCAAGAAGAA 24468502 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGGCT 25883 ||| |||||| || | ||| ||| |||| ||||| | ||| || || | Sbjct 24468501 GGCAGATTGGGCCTTGCGTTAGATTGGGGACAA--AGAG-GCTACCTATGGAGAACGTGT 24468445 Query 25884 GGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTG 25943 |||||||||||||| ||||| |||||||| || ||||| ||||| | || ||||| Sbjct 24468444 TGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTG 24468385 Query 25944 GCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 ||||||| | | | |||| ||||| || || |||||||| || || || ||||| | Sbjct 24468384 GCTCAAGAA-ACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAG 24468326 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 | |||||| | ||| | || |||||||||||| Sbjct 24468325 ATGAGGGTTTACACTGTGACTTTGCCTGCCTG 24468294 >seq1230 Length=159902609 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || || ||| | |||||||||||||| ||||| |||||||| || ||||| ||||| Sbjct 150440468 GGAGAACGGGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCA 150440409 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 | || |||||||||||| | | | |||| |||||||| || |||||||| || || Sbjct 150440408 TCAATATTCTGGCTCAAG-AAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACT 150440350 Query 25992 CATCAGCAGGGACGAGG 26008 || ||||| || |||| Sbjct 150440349 TATTAGCAGAGATGAGG 150440333 Score = 84.2 bits (92), Expect = 4e-11 Identities = 104/137 (76%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || || ||| | |||||||||||||| ||||| |||||||| || ||||| ||||| Sbjct 150432072 GGAGAACGGGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCA 150432013 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 | || |||||||||||| | | | |||| |||||| |||| || ||| ||| || || Sbjct 150432012 TCAATATTCTGGCTCAAG-AAACGAGGACTGATGCCC-GGCTCCACATTT-CAATGAACT 150431956 Query 25992 CATCAGCAGGGACGAGG 26008 || ||||| || |||| Sbjct 150431955 TATTAGCAGAGATGAGG 150431939 >seq702 Length=116768492 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 ||||||||| || ||||| |||||||| || |||||| ||| | || |||||||| Sbjct 5323831 AGCCTTTGCCGCAGTGGAAGGCATCTTCTTTCCCGGTTCAGCTGCATCGATGTTCTGGCT 5323772 Query 25947 CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 |||| | | |||||| |||||||| || ||||||| ||||| | ||||| || | Sbjct 5323771 CAAG-AAAGGGGGACTGATGCCCGGCCTCACACTTTCCAATGAGCTTAGTAGCAGAGATG 5323713 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 ||||| | | | | || ||||||||||| Sbjct 5323712 AGGGTTTACGCTGTGA-CTTGCCTGCCTG 5323685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928755654120320