Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1 140 6e-28 seq233 123 4e-23 seq2763 120 5e-22 seq3640 91.5 3e-13 >seq1 Length=114275543 Score = 140 bits (154), Expect = 6e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||| || || || | ||| ||| Sbjct 8597702 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCT 8597643 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || |||||||| | ||| || ||||||||||| |||||||| ||||| || Sbjct 8597642 AGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 8597583 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| || | |||||||| ||||| |||||||| Sbjct 8597582 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACTTCAAGAGTGATAGTTTTT 8597523 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || |||||||| || || ||||| || Sbjct 8597522 CCTGTAAGGGTTTTTACGAAAATCTGCATCTT 8597491 >seq233 Length=141296404 Score = 123 bits (136), Expect = 4e-23 Identities = 157/216 (73%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||| || || || | ||| ||| Sbjct 109921680 ACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCT 109921739 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG- 193270 | ||| || || |||||||| | ||| || ||||||||||| |||||||||||||| || Sbjct 109921740 AGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGG 109921799 Query 193271 ---TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGT 193327 ||| |||| |||| |||| || ||||| || | || || || ||||| ||||| Sbjct 109921800 CCTTATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCCAGAGTGATAGT 109921859 Query 193328 TTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| || |||||||| || || ||||| || Sbjct 109921860 CTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 109921895 >seq2763 Length=65901067 Score = 120 bits (132), Expect = 5e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||| || || || | ||| ||| Sbjct 824247 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCT 824306 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || |||||||| | ||| || ||||||||||| |||||||| ||||| || Sbjct 824307 AGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 824366 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| || | ||||| || |||| ||||| || Sbjct 824367 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGGGATAGTCTTT 824426 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | |||||||| || || ||||| Sbjct 824427 CCTGTACGGGTTTTTACGAAAATCTGCAT 824455 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| |||| || || ||||| |||| || | |||||| || || ||||| Sbjct 60922707 ATACCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCA 60922648 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || |||||||| || | ||||| || |||||| Sbjct 60922647 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGA 60922588 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || || |||| || | ||| || || || | ||| Sbjct 60922587 GGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCC 60922528 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || | || || || || || || || || || ||||| ||||||||||| Sbjct 60922527 ACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTT 60922475 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || ||||| |||| || | |||||| || || ||||| Sbjct 60922935 ATACCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCA 60922876 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || ||||| || | ||||| || |||||| Sbjct 60922875 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 60922816 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || || |||| || | ||| || ||||| | ||| Sbjct 60922815 GGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCC 60922756 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || || || ||||| || ||||| Sbjct 60922755 ACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 60922706 >seq3640 Length=31815103 Score = 91.5 bits (100), Expect = 3e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 || ||| | ||| || ||||| || || |||| |||| || | |||||| || || Sbjct 21636592 AACTTAGACACCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTT 21636533 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || | || | ||| || | || || |||||||| || | ||||| || Sbjct 21636532 GTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTG 21636473 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| || ||||| || ||||| || || | || | ||| ||| || ||| Sbjct 21636472 ATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCT 21636413 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||| || || || || || || || || || || || || ||||| || |||||| Sbjct 21636412 GGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATT 21636355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899568055668960