Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3640 176 7e-39 seq1 102 1e-16 seq233 91.5 2e-13 >seq3640 Length=31815103 Score = 176 bits (194), Expect = 7e-39 Identities = 568/871 (65%), Gaps = 19/871 (2%) Strand=Plus/Plus Query 17870 TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATG--ATATTAAATTCA 17927 ||||| || ||| | ||||| ||||| || ||||||||||||| || ||||| | || Sbjct 24468013 TATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGCAATATTC--TCCA 24468070 Query 17928 TAAAATCAAATGGATTAGTGGTTTTAT-AATATTTTTCTTGTATTAATTCGTATAATAA- 17985 |||| ||||||||||| | | | | || | || || | | | | |||| Sbjct 24468071 TAAAGTCAAATGGATT--TTCTACTCTGAACACCTTGCTAAAACCCAGTTCCAGCATAAG 24468128 Query 17986 TCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCT 18045 ||| || || |||||||| | || || ||| || ||||||||| || | || | Sbjct 24468129 TCTGTCAGCCACAAATTCAATGTACTGCTTCATTAACATGCAATTCATCCCAATGAGCTT 24468188 Query 18046 GAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTT 18105 | ||| | || ||| | | || || | || |||| ||||| | | ||||| | Sbjct 24468189 CACAGGCAAGGCGTCAGTGAGGAACTCCTCCTGTATCCTAACAGCATTGATAATTATTTC 24468248 Query 18106 TATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAA 18165 | |||| || | | | ||||| | | ||| || || || | || ||||| Sbjct 24468249 TTTTACTCTCTGCTCCGACGGTTTATGTACCAGGTGTTTG-AACATCAGG--CAGGCAAA 24468305 Query 18166 ATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCAT 18225 ||| ||||||||| ||||||||| || | ||| || ||| || | || ||||| Sbjct 24468306 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCAT 24468365 Query 18226 TATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTC 18285 | |||| ||| || ||||| ||||| ||||| ||| || ||||||||| || || || Sbjct 24468366 CAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTC 24468425 Query 18286 AAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCCATT 18344 || ||| || || |||| | | ||| || | | | ||| | ||| | Sbjct 24468426 CACTGCA-GCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCTAAC 24468484 Query 18345 TTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAAT 18404 ||||| ||| | | | ||| || || | | || ||||| || | || Sbjct 24468485 GCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTAAATGGCATTGAAGAGAT 24468544 Query 18405 CATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAAT 18464 || |||||||||||||||| || ||||| || || | | | |||||||||||||| Sbjct 24468545 ATTCCCTTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAAT 24468604 Query 18465 GTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAA--T 18522 | ||| ||||||| || || || || | ||| || | | |||||| | | |||| | Sbjct 24468605 GCATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCCTCTGTAATCTGAACTT 24468664 Query 18523 C-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAA 18581 | | ||| ||||| || ||||| || ||||| ||||| || ||| || ||| || | Sbjct 24468665 CTTGGCT---AAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTAGCTGCAAAGA 24468721 Query 18582 ATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTA 18641 | |||| ||||| ||||||| ||| |||| | ||| ||| | ||| | | | Sbjct 24468722 AAGCCAGAACATGCGATATGAAATATTTCTCATCAGGCTTCAGAGCTTCCCAGTGCTGAA 24468781 Query 18642 TATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACA 18701 | || || || ||||| || || | | |||||||| || | || || | || |||| Sbjct 24468782 TGTCCTTGGAAAGATCCACCTCCTTGGCCGTCCAAAAGGAAGCCTCAGCTTTCTTATACA 24468841 Query 18702 TTTTATAAATATCTTCATGTTGTATAGGAAA 18732 ||| ||||||| | | || |||||||| Sbjct 24468842 TTTGCCAAATATCATGGTATTCGATAGGAAA 24468872 >seq1 Length=114275543 Score = 102 bits (112), Expect = 1e-16 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || | ||||| | || ||||||||||| || | ||||| ||| Sbjct 8597491 AAGATGCAGATTTTCGTAAAAACCCTTACAGGAAAAACTATCACTCTTGAAGTTGAACCC 8597550 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| || ||| || || || || || ||||| ||||| || ||||| || Sbjct 8597551 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 8597610 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || |||||| |||||| ||| || ||||| || |||||| | ||||| || || || Sbjct 8597611 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGACTAC 8597670 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || || ||| ||| | || |||||| | ||||| ||| | | || |||| Sbjct 8597671 AACAT-TCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTG 8597722 >seq233 Length=141296404 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || | ||||| | || ||||| ||||| || | || |||||| Sbjct 109921895 AAGATGCAGATTTTCGTAAAAACCCTTACAGGAAAGACTATCACTCTGGAGGTCGAACCC 109921836 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATA----CAAGATAAAGAAGGCATACCTCC 155935 || |||| || ||| || || || ||| || ||||||||||| || ||||| Sbjct 109921835 TCGGATACAATAGAAAATGTAAAGGCCAAGATAAGGCCAGGATAAAGAAGGAATTCCTCC 109921776 Query 155936 AGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGA 155995 || || |||||| |||||| ||| || ||||| || |||||| | ||||| || || Sbjct 109921775 TGATCAGCAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGA 109921716 Query 155996 TTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038 || || || || ||| | || |||||| | ||||| ||| Sbjct 109921715 CTACAACATTCAGAAGGAGTCCACTCTTCATCTTGTGTTGAGA 109921673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731801758584800