Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq233 111 3e-19 seq3640 96.9 7e-15 >seq233 Length=141296404 Score = 111 bits (122), Expect = 3e-19 Identities = 168/239 (70%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 192305 TAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAAT 192364 || ||||||| | ||| | || || | ||| | ||| | ||| || || || || | Sbjct 109921657 TAGTACCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGT 109921716 Query 192365 CAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAG 192424 |||| || || ||| |||| || | ||| || |||||||| || | ||| || ||||||| Sbjct 109921717 CAGACAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAG 109921776 Query 192425 GTGGTATTCCTTCTTTATCTTG----TATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480 | || |||||||||||||| || ||| || |||||||| ||| | ||| || Sbjct 109921777 GAGGAATTCCTTCTTTATCCTGGCCTTATCTTGGCCTTTACATTTTCTATTGTATCCGAG 109921836 Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | ||| || || ||||| || || || || || | ||||| | || |||||||| || Sbjct 109921837 GGTTCGACCTCCAGAGTGATAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 109921895 >seq3640 Length=31815103 Score = 96.9 bits (106), Expect = 7e-15 Identities = 364/577 (63%), Gaps = 4/577 (1%) Strand=Plus/Plus Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883 || ||||| ||| ||||||||||| || || |||| |||||| ||| || | Sbjct 24468298 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 24468357 Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 49943 || ||||| | ||||| || || ||||| ||||||||||||||| || ||||||||| Sbjct 24468358 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAG 24468417 Query 49944 ATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT 50003 || || || || ||||| |||| | | | ||||| | | | | || Sbjct 24468418 ATGCCTTCCACTGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCA 24468477 Query 50004 ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 50063 ||| || | ||||||||||| || || |||| | |||| || ||| || || || Sbjct 24468478 ATCTAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTAAATGGCATTG 24468537 Query 50064 AATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATT 50123 || | | | |||| | || | | | ||||||| Sbjct 24468538 AAGAGATATTCCCTTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATT 24468597 Query 50124 TCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATAC 50183 |||||||| | |||||| || ||||| || ||| || | || |||| | | Sbjct 24468598 TCAGAATGCATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCCTCTGTAATC 24468657 Query 50184 TGAACTTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTG 50241 |||||||| || | ||||| || || || || ||| ||| || |||||| |||| Sbjct 24468658 TGAACTTCTTGGCTA--AATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTAGCTG 24468715 Query 50242 CGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAG 50301 | ||||| || | ||| | || |||| ||| |||| | || | | |||||| Sbjct 24468716 CAAAGAAAGCCAGAACATGCGATATGAAATATTTCTCATCAGGCTTCAGAGCTTCCCAGT 24468775 Query 50302 ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTT 50361 | || || || || | ||| || || | |||||||| || || | | ||| | Sbjct 24468776 GCTGAATGTCCTTGGAAAGATCCACCTCCTTGGCCGTCCAAAAGGAAGCCTCAGCTTTCT 24468835 Query 50362 TATACATTTGATATATATCAAAATGTTCAATGGGAAA 50398 |||||||||| | |||||| | ||| || ||||| Sbjct 24468836 TATACATTTGCCAAATATCATGGTATTCGATAGGAAA 24468872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984383152395300