Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1 131 3e-25 seq233 123 5e-23 seq4546 122 2e-22 seq2763 109 1e-18 seq3640 86.0 1e-11 >seq1 Length=114275543 Score = 131 bits (144), Expect = 3e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||| | ||| || ||| || Sbjct 8597730 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTT 8597671 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || || | ||| || ||||||||||| | ||| || || Sbjct 8597670 GTAGTCAGACAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTG 8597611 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 8597610 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGA 8597551 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| ||||| ||||| || ||||| || || | ||||| | ||| |||||||| || Sbjct 8597550 GGGTTCAACTTCAAGAGTGATAGTTTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 8597491 >seq233 Length=141296404 Score = 123 bits (136), Expect = 5e-23 Identities = 174/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || ||||||| | ||||| || || | ||| | ||| | ||| || ||| || Sbjct 109921652 TTTCTTAGTACCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTT 109921711 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || || | ||| || ||||||||||| | ||| || || Sbjct 109921712 GTAGTCAGACAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTG 109921771 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTG----TATTTTATTTTTTACATTAGTTATAGTAT 172008 ||||| || |||||||||||||| || ||| || |||||||| ||| |||| Sbjct 109921772 ATCAGGAGGAATTCCTTCTTTATCCTGGCCTTATCTTGGCCTTTACATTTTCTATTGTAT 109921831 Query 172009 CTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCA 172068 | || | ||| || || ||||| || || || || || | ||||| | ||| ||||||| Sbjct 109921832 CCGAGGGTTCGACCTCCAGAGTGATAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCA 109921891 Query 172069 TTTT 172072 | || Sbjct 109921892 TCTT 109921895 Score = 122 bits (134), Expect = 2e-22 Identities = 173/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCT-CTTTAGAAATAT 171891 |||| || ||||||| | ||||| || || | ||| | ||| | || |||| ||| | Sbjct 108315119 TTTCTTAGTACCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTGCTTTTGAA-TGG 108315061 Query 171892 TATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTT 171951 |||| || || |||| ||| | || || | ||| || ||||||||||| | ||| || | Sbjct 108315060 TATAGTCAGACAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCT 108315001 Query 171952 GGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTG 172011 | || || || |||||||| ||||| || || || |||||||| ||| ||||| | Sbjct 108315000 GATCTGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCG 108314941 Query 172012 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTT 172071 | | ||| || || ||||| || || || || || | ||||| | ||| |||||||| | Sbjct 108314940 AGGGTTCGACCTCGAGAGTGATAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCT 108314881 Query 172072 T 172072 | Sbjct 108314880 T 108314880 >seq4546 Length=144923918 Score = 122 bits (134), Expect = 2e-22 Identities = 171/240 (71%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | | | | ||| || ||| || Sbjct 25087028 TTTCTTAGCACCACCACAAAGTCTCAACACAAGATGAAGAATGGTCTCCTTTTGAATGTT 25086969 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 ||| || |||| ||| | || |||| ||| || ||||||||||| | ||| || || Sbjct 25086968 ATAGTC----AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTG 25086913 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 |||| | || |||||||| ||||| || || || | |||||||| || |||||||| Sbjct 25086912 GTCAAGAGGAATTCCTTCCTTATCCTGGATCTTGGTCTTTACATTTTCTAATGTATCTGA 25086853 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || ||||| ||||| || || | | ||| | ||||| |||||||| || Sbjct 25086852 GGGTTCAACCTCGAGAGTCATGGTCTTCCCCATAAGGGTTATTATGAAAATCTGCATCTT 25086793 >seq2763 Length=65901067 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| || || | ||| | ||| | ||| || ||| || || || || Sbjct 824228 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 824287 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| ||| | || || | ||| || ||||||||||| | ||| || || ||||| || Sbjct 824288 CAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 824347 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| ||||| || || || |||||||| ||| ||||| || | ||| || Sbjct 824348 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 824407 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| || || || || || ||||| | ||| |||||||| Sbjct 824408 CTCGAGAGGGATAGTCTTTCCTGTACGGGTTTTTACGAAAATCTGCAT 824455 >seq3640 Length=31815103 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39141 TGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCT 39200 |||||||| || || || |||| |||||| ||| || | || ||||| | |||| Sbjct 24468313 TGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCT 24468372 Query 39201 CTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACAC 39260 | || || ||||| ||||||||||||||| || ||||||||| || || ||||| Sbjct 24468373 CGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCA 24468432 Query 39261 GCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAATTTATGGCC 39320 ||||| |||| | | | ||||| | | | | || |||| || | |||| Sbjct 24468433 GCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCTAACGCAAGGCC 24468492 Query 39321 CAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 |||||||| || || |||| | |||| || ||| || || || || Sbjct 24468493 CAATCTGCCTTCTTCTTGACACAAGGCATCGTTTAAATGGCATTGAA 24468539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905049129572400