Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3640 132 1e-25 seq2763 96.9 1e-14 >seq3640 Length=31815103 Score = 132 bits (146), Expect = 1e-25 Identities = 378/570 (66%), Gaps = 16/570 (3%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 |||| ||| || || || | || | || |||||||| |||||||| ||| | | | Sbjct 24468881 TTTGCTATCTTTCCTATCGAATACCATGATATTTGGCAAATGTATAAGAAAGCTGAGGCT 24468822 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACC--CAGCCCACTGGGAAGCCC 133193 | |||||||| | | || || ||| | ||||| ||| |||| |||||||||| | Sbjct 24468821 TCCTTTTGGACGGCCAAGGAGGTGGATCTTTCCAAGGACATTCAGC--ACTGGGAAGCTC 24468764 Query 133194 TTACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGAT 133252 | | ||||| ||| |||| || || ||| || | || || ||||| || |||||| Sbjct 24468763 TGAAGCCTGATGAGAAATATTTCATATCGCATG-TTCTGGCTTTCTTTGCAGCTAGTGAT 24468705 Query 133253 GGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCC 133312 || || || |||||| || | || |||| ||||||||| | | || || Sbjct 24468704 GGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATTACAGAGGCT 24468645 Query 133313 CGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATAT--TCTA 133370 || || ||||| | || ||||| |||||||| || |||||| | ||| ||| Sbjct 24468644 CGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATGCATTCTGAAATGTATAGTCTC 24468585 Query 133371 CTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT- 133429 ||| |||||||||||||| |||||| || | | | | | || ||||| |||||| Sbjct 24468584 CTC--ATTGATACTTACATTAAAGATTCCAAAGAAAGGGAATATCTCTTCAATGCCATTT 24468527 Query 133430 -AGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAA 133488 | ||| | |||||| | || ||||| | || ||||| | | ||| |||||| Sbjct 24468526 AAACGA--TGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGTTAGATTGGGGACAA 24468469 Query 133489 GCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAG 133548 || | | || ||| | || || ||||||| ||| || ||||| || || Sbjct 24468468 AGAGGCTACCTATGGAGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTC 24468409 Query 133549 TGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTT 133607 |||| | || ||| || || || ||||| || || || || | | ||||| || | Sbjct 24468408 TGGTTC-TTTTGCATCAATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACAT 24468350 Query 133608 TTTCTAACGAACTTATTTCAAGGGACGAGG 133637 |||| || ||||||||| || || |||| Sbjct 24468349 TTTCCAATGAACTTATTAGCAGAGATGAGG 24468320 >seq2763 Length=65901067 Score = 96.9 bits (106), Expect = 1e-14 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 302616 AGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAG 302675 || ||| || |||||||| ||||| || || |||| |||||||| ||||||||||| | Sbjct 55561155 AGCTGTCTTGACAGCTGTGTCAATGAGCCCCTCACGCCCACCCATGGCATGGAAGAAGAA 55561214 Query 302676 CTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCG 302734 ||| || ||| || || | | ||||| |||| || || ||||| ||||||| Sbjct 55561215 CTC-AGTGGGCGTGAGGCCAGCCAGGTAGGAGTTCTCCACAAAGCCACGGCTCTCGGGCC 55561273 Query 302735 AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCT 302794 || || ||| | ||||| ||||| |||| || || | || |||| || |||| Sbjct 55561274 CATAATCATCCTTAATGAAGTGAGGCAGAGTCCGGTGCTTGAATCCAAATGGAATCCGCT 55561333 Query 302795 TTCCATCAACGTTCTGCTGTCC 302816 | || || ||||||||||| || Sbjct 55561334 TGCCCTCCACGTTCTGCTGCCC 55561355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471672810863486