Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 141 7e-29 seq233 125 6e-24 seq3640 123 2e-23 seq520 122 7e-23 seq2763 118 8e-22 seq4546 95.1 9e-15 seq1989 91.5 1e-13 >seq1 Length=114275543 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 8597706 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 8597647 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| |||||||||||| || ||||| || || || || Sbjct 8597646 TTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 8597587 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || |||| ||||||||||| ||||| Sbjct 8597586 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACTTCAAGAGTGATAGT 8597527 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| || || | |||||| || || |||||||| || Sbjct 8597526 TTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 8597491 >seq233 Length=141296404 Score = 125 bits (138), Expect = 6e-24 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || || |||||||| || || | | || || ||| Sbjct 109921676 CAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 109921735 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| |||||||||||| || ||||| || ||||| || Sbjct 109921736 TTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 109921795 Query 29694 TTG---TAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || | || || | || ||| |||||| || || || |||| || || ||||| | Sbjct 109921796 CTGGCCTTATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCCAGAGTGA 109921855 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||| || || || | |||||| || || |||||||| || Sbjct 109921856 TAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 109921895 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| | ||||||||| |||| || | | || || ||| Sbjct 108315095 CAACACAAGATGAAGAGTGGACTGCTTTTGAATGGTATAGTCAGACAAAGTACGTCCATC 108315036 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| |||||||||||| || ||||| || || || || Sbjct 108315035 TTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATC 108314976 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || |||| || || ||||| ||||| Sbjct 108314975 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATAGT 108314916 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || |||||||| || Sbjct 108314915 CTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 108314880 >seq3640 Length=31815103 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| ||||| || || ||||| ||||| || ||||| || || | Sbjct 21636582 CCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 21636523 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || ||| | |||| || |||||||| || || Sbjct 21636522 AGGGTGCGTCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGG 21636463 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | ||| |||||| | || | ||||| | || || Sbjct 21636462 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACC 21636403 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || ||||| || | ||| || ||||| ||||||||| Sbjct 21636402 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATT 21636355 >seq520 Length=73916538 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| ||||| || | ||||| ||||| || ||||| || || | Sbjct 72484097 CCTCCCCTCAAGCGCAGGACCAAGTGCATGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 72484156 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || |||||| | |||| || ||| |||| || ||| Sbjct 72484157 AGGGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCGGATCAGGGGGA 72484216 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | ||| |||||| | || | || ||| | || || Sbjct 72484217 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCACTGGGCTCAACC 72484276 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || ||||| |||||||| Sbjct 72484277 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 72484323 >seq2763 Length=65901067 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 824243 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 824302 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| |||||||||||| || ||||| || || || || Sbjct 824303 TTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 824362 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || |||| || || |||| ||||| Sbjct 824363 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGGGATAGT 824422 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || |||||| || || |||||||| Sbjct 824423 CTTTCCTGTACGGGTTTTTACGAAAATCTGCAT 824455 >seq4546 Length=144923918 Score = 95.1 bits (104), Expect = 9e-15 Identities = 153/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||| || |||||||||||||| || | || || ||| Sbjct 25087004 CAACACAAGATGAAGAATGGTCTCCTTTTGAATGTTATAGTC----AAAGTACGTCCATC 25086949 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||||||||| || | ||||| || || || || Sbjct 25086948 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCAAGAGGAATTCCTTCCTTATC 25086889 Query 29694 TTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 || || || || || ||| |||||| || || || |||| || || ||||| || | Sbjct 25086888 CTG-GATCTTGGTCTTTACATTTTCTAATGTATCTGAGGGTTCAACCTCGAGAGTCATGG 25086830 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || || | | |||| | | || |||||||| || Sbjct 25086829 TCTTCCCCATAAGGGTTATTATGAAAATCTGCATCTT 25086793 >seq1989 Length=108143057 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| ||||| || | ||||| ||||| || ||||| || || | Sbjct 8822909 CCTCCCCTCAAGCGCAGGACCAAGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 8822850 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| | | || || || || |||||| | |||| || |||||||| || || Sbjct 8822849 AGGGTGCGTCCACCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGG 8822790 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACA 29712 || || || |||||||| | ||| |||||| Sbjct 8822789 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACA 8822757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385183152872598