Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq1 100 3e-16 seq233 93.3 4e-14 seq2763 86.0 6e-12 seq3640 84.2 2e-11 >seq1 Length=114275543 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 137257 ||| || | ||||| || || || ||||| |||||||| || || || | || | | Sbjct 8597706 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 8597648 Query 137258 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 137317 |||| ||||| || |||||| | ||||| | ||||||||| ||||| || ||||| || | Sbjct 8597647 CTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTAT 8597588 Query 137318 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCG 137377 | || || |||| | ||| | || || | |||||| ||||||| ||| | | Sbjct 8597587 CCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACTTCAAGAGTGATAG 8597528 Query 137378 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | || || || | ||||||||||| || ||||| Sbjct 8597527 TTTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 8597494 >seq233 Length=141296404 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 137257 ||| || | ||||| || || || || || |||||||| || || || | || | | Sbjct 109921676 CAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 109921734 Query 137258 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 137317 |||| ||||| || |||||| | ||||| | ||||||||| ||||| || |||||||| | Sbjct 109921735 CTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTAT 109921794 Query 137318 C--GGTAATTTTTTGT--TTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTC 137373 | || | | ||| |||| | ||| | || || | |||||| || || | ||| Sbjct 109921795 CCTGGCCTTATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCCAGAGTG 109921854 Query 137374 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | ||||| || || | ||||||||||| || ||||| Sbjct 109921855 ATAGTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 109921892 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| ||||| || |||||| | ||||| | ||||||||| ||||| || ||||| || Sbjct 108315037 TCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTA 108314978 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || || || |||| | ||| | || || | |||||| || || | ||| | Sbjct 108314977 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATA 108314918 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| || || | ||||||||||| || ||||| Sbjct 108314917 GTCTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 108314883 >seq2763 Length=65901067 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 137257 ||| || | ||||| || || || ||||| |||||||| || || || | || | | Sbjct 824243 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 824301 Query 137258 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 137317 |||| ||||| || |||||| | ||||| | ||||||||| ||||| || ||||| || | Sbjct 824302 CTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTAT 824361 Query 137318 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCG 137377 | || || |||| | ||| | || || | |||||| || || | || | | Sbjct 824362 CCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGGGATAG 824421 Query 137378 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || || ||||||||||| || ||||| Sbjct 824422 TCTTTCCTGTACGGGTTTTTACGAAAATCTGCAT 824455 >seq3640 Length=31815103 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| | || |||| || || || | || || ||||| || |||||||| || Sbjct 21636582 CCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 21636523 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || | ||||| || || || || ||| ||||||| | |||||||| ||||| Sbjct 21636522 AGGGTGCGTCCA-TCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGATCAGGAGG 21636464 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| ||||| || ||| || | | || | ||||| |||| || || Sbjct 21636463 GATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCAC 21636404 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||||||||||| || || || || || ||||| Sbjct 21636403 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 21636356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488497111989600