Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq1230 165 8e-36 seq1582 129 5e-25 >seq1230 Length=159902609 Score = 165 bits (182), Expect = 8e-36 Identities = 682/1064 (64%), Gaps = 45/1064 (4%) Strand=Plus/Minus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| ||| |||||||| ||| || ||| ||| |||||||| || | Sbjct 110502862 ATGCCTTCTATGTCGCAGACCTTGGAGACATTCTGAAGAAACACCGAAGATGGCTAAAAG 110502803 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCAGAACGACGAGAGAGTCCTC- 20323 || | ||| |||| || ||||| || || || |||||| |||| | | Sbjct 110502802 CTCTTCCTCGTGTCACCCCCTTTTATGCAGTCAAATGT---AACGACAGCAGAGCCATTG 110502746 Query 20324 --AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGT 20381 |||||||| ||| | | || || ||||||||||| || ||| || || || | Sbjct 110502745 TGAAGACCCTCGCTACAATCGGGACAGGATTTGACTGTGCTAGCAAGACTGAAATACAAT 110502686 Query 20382 TACTGCAAAATCTGGGAGT-TCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAG 20440 | |||| | ||| || || || | |||| ||||| | | ||| ||||||| ||| || Sbjct 110502685 TGGTGCAGAGTCTCGGGGTGTCTC-CAGAGAGGATTATCTATGCAAATCCTTATAAACAA 110502627 Query 20441 CCTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAA 20500 || || || | |||||| || | | |||||| | |||||||||||||||||||| Sbjct 110502626 GTGTCTCAAATTAAGTATGCTGCCAATAATGGAGTCCAGATGATGACTTTTGATAGTGAA 110502567 Query 20501 GAAGAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAA 20560 | ||| | | ||| ||| | || | | || ||| |||| || ||||| Sbjct 110502566 GTTGAGTTGATGAAAGTTGCCAGAGCACATCCCAAGGCAAAGTTGGTTTTGCGGATTGCC 110502507 Query 20561 GTGGATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCC 20620 ||||| || || ||| | | | | ||||| || ||||| || | | || || Sbjct 110502506 ACTGATGATTCCAAAGCAGTCTGTCGATTCAGTGTTAAATTTGGTGCCACACTGAAAACC 110502447 Query 20621 AGCCAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTC 20680 ||| | || | ||| ||| ||| | | | || || ||||| ||||||||| Sbjct 110502446 AGCAGGCTTCTTTTGGAACGGGCAAAAGAGCTCAATATTGATGTCATCGGTGTCAGCTTC 110502387 Query 20681 CACGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGG 20740 ||||| || |||||||| | ||| | || | | | | || || |||| ||| | Sbjct 110502386 CACGTAGGAAGTGGCTGTACTGATCCTGAGACCTTCGTGCAGGCAATCTCTGATGCCCGC 110502327 Query 20741 AGAGCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTG 20798 | | |||||| | || ||||| | || ||| |||||| || |||||| ||||| Sbjct 110502326 TGTGTCTTTGACATGGG--GGCTGAAGTTGGTTTTAGCATGTATCTGCTGGATACTGGTG 110502269 Query 20799 GCGGCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCA 20855 | |||||| || ||||| |||| || ||| | ||||| || || | || Sbjct 110502268 GTGGCTTT-CCTGGATC--TGAGGATGTGAAGCTTAAATTTGAAGAGATCACCAGTGTAG 110502212 Query 20856 TTAACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAAC 20915 | ||| | || ||||| | | |||||||| || | ||| ||| || | ||| | Sbjct 110502211 TCAACCCAGCATTGGACAAGTATTTTCCATCAGACTCTGGAGTGAGAATCATAGCTGAGC 110502152 Query 20916 CTGGCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGC--TAAAAA 20973 | ||||| || || | | | || || | || | || || | | | ||||| ||||| Sbjct 110502151 CAGGCAGATATTATGTTGCATCAGCTTTCACGCTCGCAGTTAATATCATTGCCAAAAAAA 110502092 Query 20974 GTGTGTTGAAG--ACA------CTCCTG--GA-------------GATAAAAAGTTTATG 21010 || || ||| ||| || || || || ||| |||||| Sbjct 110502091 TCGTATTAAAGGAACAGATAGGCTGATGATGAAGATGAGTCCAATGAACAAACCTTTATG 110502032 Query 21011 TATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGT 21070 |||||||| |||||||| || ||||| ||||| ||||| | | | | ||||| | Sbjct 110502031 TATTATGTGAATGATGGAGTATATGGATCATTTAATTGCATCCTTTATGATCATGCACAC 110501972 Query 21071 CCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTCTAGCAT 21129 | ||| | |||| || ||| | || || || || | || || ||||| Sbjct 110501971 GTAAAGCCCCTTCTGCAAAAGAGACCTAAACC-AGATGAAAAGTATTACTCATCCAGCAT 110501913 Query 21130 TTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAGCT 21189 ||||| || | || |||||| | || | |||||| |||| ||||| ||||| || | Sbjct 110501912 ATGGGGACCAACATGTGATGGCCTTGACCGGATTGTTGAGCGCTGTGACCTGCCCAAGAT 110501853 Query 21190 TCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 || || || |||| | | | |||||||||||||| ||||||| Sbjct 110501852 GCACGTAGGTGACTAGATGCTCTTTGAAAACATGGGTGCTTACA 110501809 >seq1582 Length=98468360 Score = 129 bits (142), Expect = 5e-25 Identities = 673/1063 (63%), Gaps = 42/1063 (4%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| ||| |||||||| ||| || ||| ||| |||||||| || | Sbjct 12273540 ATGCCTTCTATGTCGCAGACCTTGGAGACATTCTGAAGAAACACCGAAGATGGCTAAAAG 12273599 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCAGAACGACGAGAGA-GTCCTC 20323 || | ||| ||| || ||||| || || ||| | || | |||| || | Sbjct 12273600 CTCTTCCTGGCGTCGCCCCCTTTTATGCAGTCAAGTGTAATGACAGC-AGAGCCGTTGTG 12273658 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 |||||||| ||| | | || || ||||||||||| || ||| || || | || Sbjct 12273659 AAGACCCTCGCTACAATGGGGACAGGATTTGACTGTGCTAGCAAGACCGAAATACGATTG 12273718 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | || || || | |||| ||| | | | ||| ||||||||||| || Sbjct 12273719 GTGCAGAGTCCCGG-GTGCCTCCAGAGAGGGTTATCTATGCAAATCCTTGTAAACAAGTG 12273777 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | |||||| || | | |||||| | ||||||||||||||||||||| Sbjct 12273778 TCTCAAATTAAGTATGCTGCCAATAATGGAGTCCAGATGATGACTTTTGATAGTGAAGCT 12273837 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||||| | ||| ||| | || | | || ||| |||| || |||| Sbjct 12273838 GAGCTGATGAAAGTTGCCAGAGCACATCCCAAGGCAAAGTTGGTTTTGCAGATTGCTACT 12273897 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | ||| |||| || ||||| || | | || ||||| Sbjct 12273898 GATGATTCCAAAGCAGTCTGTCGACTCCGTGTTAAATTTGGTGCCACGCTAAAAACCAGC 12273957 Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683 | || | || ||| ||| | | | || || ||||| |||||||||||| Sbjct 12273958 AGGCTTCTTTTGGAATGGGCAAAAGAGCTCAATATTGATGTCATCGGTGTCAGCTTCCAC 12274017 Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743 || || |||||||| | ||| | || | | | | || || |||| ||| | | Sbjct 12274018 GTAGGAAGTGGCTGTACTGATCCTGAGACCTTCGTGCAGGCAATCTCTGATGCCCGCTGT 12274077 Query 20744 GCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGCG 20801 | |||||| | || ||||| | | ||| |||||| || |||||| |||||| | Sbjct 12274078 GTCTTTGACATGGG--GGCTGAGGTTGATTTTAGCATGTATCTGCTGGATACTGGTGGTG 12274135 Query 20802 GCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCATTA 20858 ||||| || ||||| |||| || ||| | ||||| || || | || | | Sbjct 12274136 GCTTT-CCTGGATC--TGAGGATGTGAAGCTTAAATTTGAAGAGATCACCAGTGTAGTCA 12274192 Query 20859 ACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCTG 20918 || | || ||||| | | |||||||| || | ||| ||| || | ||| || | Sbjct 12274193 ACCCAGCATTGGACAAGTATTTTCCATCAGACTCTGGAGTGAGAATCATAGCTGAGCCAG 12274252 Query 20919 GCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGC--TAAAAAGTG 20976 |||| || || | | | || || | || | | || | | | |||| ||||| | Sbjct 12274253 GCAGATATTATGTTGCATCAGCTTTCACACTCACAGTTAATATCGTTGCCAAAAAAATCG 12274312 Query 20977 TGTTGAAG--ACA------CTC-----CTGGAGAT------------AAAAAGTTTATGT 21011 | || ||| ||| ||| || |||| ||| ||||||| Sbjct 12274313 TATTAAAGGAACAGATAGGCTCTGATGATGAAGATGAGTCCAATGAACAAACCTTTATGT 12274372 Query 21012 ATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGTC 21071 |||| || |||||||| || ||||| ||||| ||||| | | | | ||||| | | Sbjct 12274373 ATTACGTGAATGATGGAGTATATGGATCATTTAATTGCATCCTTTATGATCATGCACATG 12274432 Query 21072 CTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTCTAGCATT 21130 | ||| | |||| || ||| | || || || || | || || ||||| Sbjct 12274433 TAAAGCCCCTTCTGCAAAAGAGACCTAAACC-AGATGAAAAGTATTACTCATCCAGCATA 12274491 Query 21131 TGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAGCTT 21190 ||||| || | || |||||| | || | |||||| ||| ||||| ||||| | | Sbjct 12274492 TGGGGACCAACATGTGATGGCCTTGACCGGATTGTTGAGCACTGTGACCTGCCTAAAATG 12274551 Query 21191 CAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 || || || |||||| | | |||||||||||||| ||||||| Sbjct 12274552 CACGTAGGTGACTGGATGCTCTTTGAAAACATGGGTGCTTACA 12274594 Score = 98.7 bits (108), Expect = 9e-16 Identities = 663/1061 (62%), Gaps = 56/1061 (5%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| ||| |||||||| ||| || ||| ||| |||||||| || | Sbjct 12261901 ATGCCTTCTATGTCGCAGACCTTGGAGACATTCTGAAGAAACACCGAAGATGGCTAAAAG 12261960 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCAGAACGACGAGAGA-GTCCTC 20323 || | ||| ||| || ||||| || || ||| | || | |||| || | Sbjct 12261961 CTCTTCCTCGCGTCGCCCCCTTTTATGCAGTCAAGTGTAATGACAGC-AGAGCCGTTGTG 12262019 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 |||||||| ||| | | || || ||||||||||| || ||| || || | || Sbjct 12262020 AAGACCCTCGCTACAATGGGGACAGGATTTGACTGTGCTAGCAAGACCGAAATACGATTG 12262079 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | || || || | |||| ||| | | | ||| ||||||||||| || Sbjct 12262080 GTGCAGAGTCCCGG-GTGCCTCCAGAGAGGGTTATCTATGCAAATCCTTGTAAACAAGTG 12262138 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | |||||| || | | |||||| | ||||||||||||||||||||| Sbjct 12262139 TCTCAAATTAAGTATGCTGCCAATAATGGAGTCCAGATGATGACTTTTGATAGTGAAGCT 12262198 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||||| | ||| ||| | || | | || ||| |||| || |||| Sbjct 12262199 GAGCTGATGAAAGTTGCCAGAGCACATCCCAAGGCAAAGTTGGTTTTGCAGATTGCTACT 12262258 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | ||| |||| || ||||| || | | || ||||| Sbjct 12262259 GATGATTCCAAAGCAGTCTGTCGACTCCGTGTTAAATTTGGTGCCACGCTAAAAACCAGC 12262318 Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683 | || | || ||| ||| | | | || || ||||| |||||||||||| Sbjct 12262319 AGGCTTCTTTTGGAATGGGCAAAAGAGCTCAATATTGATGTCATCGGTGTCAGCTTCCAC 12262378 Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743 || || |||||||| | ||| | || | | | | || || |||| | | | Sbjct 12262379 GTAGGAAGTGGCTGTACTGATCCTGAGACCTTCGTGCAGGCAATCTCTGA---TATGGGG 12262435 Query 20744 GCTTTTGACTTTGGCACGCTGATGGGCTTTGACATGTACCTCTTGGATATTGGTGGCGGC 20803 ||| | | |||| ||| |||||| || |||||| |||||| ||| Sbjct 12262436 GCT-----------GAGGTTGAT----TTTAGCATGTATCTGCTGGATACTGGTGGTGGC 12262480 Query 20804 TTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCATTAAC 20860 ||| || ||||| |||| || ||| | ||||| || || | || | ||| Sbjct 12262481 TTT-CCTGGATC--TGAGGATGTGAAGCTTAAATTTGAAGAGATCACCAGTGTAGTCAAC 12262537 Query 20861 GCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCTGGC 20920 | || ||||| | | |||||||| || | ||| ||| || | ||| || ||| Sbjct 12262538 CCAGCATTGGACAAGTATTTTCCATCAGACTCTGGAGTGAGAATCATAGCTGAGCCAGGC 12262597 Query 20921 AGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGC--TAAAAAGTGTG 20978 || || || | | | || || | || | | || | | | |||| ||||| || Sbjct 12262598 AGATATTATGTTGCATCAGCTTTCACACTCACAGTTAATATCGTTGCCAAAAAAATCGTA 12262657 Query 20979 TTGAAG--ACA------CTC-----CTGGAGAT------------AAAAAGTTTATGTAT 21013 || ||| ||| ||| || |||| ||| ||||||||| Sbjct 12262658 TTAAAGGAACAGATAGGCTCTGATGATGAAGATGAGTCCAATGAACAAACCTTTATGTAT 12262717 Query 21014 TATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGTCCT 21073 || || |||||||| || ||||| ||||| ||||| | | | | ||||| | | Sbjct 12262718 TACGTGAATGATGGAGTATATGGATCATTTAATTGCATCCTTTATGATCATGCACATGTA 12262777 Query 21074 ATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTCTAGCATTTG 21132 | ||| | |||| || ||| | || || || || | || || ||||| || Sbjct 12262778 AAGCCCCTTCTGCAAAAGAGACCTAAACC-AGATGAAAAGTATTACTCATCCAGCATATG 12262836 Query 21133 GGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAGCTTCA 21192 ||| || | || |||||| | || | |||||| ||| ||||| ||||| | | || Sbjct 12262837 GGGACCAACATGTGATGGCCTTGACCGGATTGTTGAGCACTGTGACCTGCCTAAAATGCA 12262896 Query 21193 AGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 || || |||||| | | |||||||||||||| ||||||| Sbjct 12262897 CGTAGGTGACTGGATGCTCTTTGAAAACATGGGTGCTTACA 12262937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463501111211040