Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq4546 264 1e-65 seq1 201 1e-46 seq1582 197 2e-45 seq947 86.0 7e-12 >seq4546 Length=144923918 Score = 264 bits (292), Expect = 1e-65 Identities = 602/900 (67%), Gaps = 7/900 (1%) Strand=Plus/Plus Query 162076 AGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAACTTGTTCGCG 162135 |||| ||| || |||||||||| || || ||| ||| | || ||||| || || Sbjct 11860223 AGATGCTCATCCAGACACTGGATGGCAAAGTGGTCGACGTCCACGTCAAACTTATTGGCA 11860282 Query 162136 AACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAACACGCACACG 162195 |||| ||| ||| || || ||||| || | || || | ||| || | |||||| Sbjct 11860283 AACAAGTGGTGC---TTGGGCAGCATCCAGTTCAAGTCTCCGGCTCCAAAAATGCACACC 11860339 Query 162196 GACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACATCCCCCTCG 162255 || |||||||| | |||| |||| || || || | || || | || || |||||| Sbjct 11860340 GAGCGCACGTGGATGCCGTTGCAGGGTGGGTAGGGAGCGCCCTTAGACATGTCACCCTCG 11860399 Query 162256 TAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTAC 162315 ||||| |||||||| || ||||| | | ||||||||||| || ||||||||| | Sbjct 11860400 TAGTACTGCCACTTGACAAACCTGGCAACCGCCTGCATGTCAGACAAGTCGTACTTATGG 11860459 Query 162316 ACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTC 162374 || | || | | ||||| || | || | || || | ||| ||||| || | || Sbjct 11860460 -CTCAGGGAGAGAGAGCCAGGGACCTCAGGGATCCTTTGGATAGTGGCCCAGAGATACTC 11860518 Query 162375 GTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTTATCGTATAG 162434 ||||| || ||||| |||| || ||||| |||||||| || ||| || | ||| Sbjct 11860519 ATCTGGGCTGTACGTGTCCTGCGCCCACTGCATGAACTTTTGGATTTTTTCATTCTCTAG 11860578 Query 162435 AATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTAT 162494 | || || || |||| | || | ||| || || || || ||||| | || | Sbjct 11860579 CACATACCCCACATACTCCCTGCTGACCACAAAATAGGCACTGCCTGAAAAAAGAGGAGT 11860638 Query 162495 GCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCAC 162554 | ||||| || |||| | ||||||||| | | | || | || || | Sbjct 11860639 TTCAAGCGGAGGACGCATTTTGACAGTCCCCGTGTTGGTCAGCTTCCCATTAACAACTGC 11860698 Query 162555 GTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGA-CGGGTGTTCGGTCTCTAGACTGT 162613 | ||| ||||||| | |||| ||| || | | ||||| || || | | Sbjct 11860699 ATACTGCTTTTTCCACCTTTCT-TCTTTATGGGAGGGCATCTTCTCGGTTTCAAGGTTAT 11860757 Query 162614 TACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGT 162673 | |||| || | ||| |||| | ||| || ||||| ||||| |||| ||||| | Sbjct 11860758 TTTCACCCATGAACGACTTGAGCTTCCTCACAATTTCTAGGTTGGTTTTAATAGGAAAAT 11860817 Query 162674 CGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTA 162733 | ||||||| ||||| || | || ||||| |||| | ||||||||| |||| | Sbjct 11860818 CCATGCCGCACAGATTTATCAAGTACTTCCAGCGTGCGCTCATTCCGTACAGGTCCTTCA 11860877 Query 162734 GACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAG 162793 ||||| || |||||||| ||||||||||| ||| | || || || ||||||||| | Sbjct 11860878 TGCAGTTGAGGTCGGCCTGAACGCGACTCCATGACACATAAACCACACTCTCCAACTGAC 11860937 Query 162794 TGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACATCG 162853 |||| |||||||| || |||| | || | || ||| |||| || | |||| | Sbjct 11860938 TGGCCACAAAGACGTTACTGAAAAAGGACGCGATGCCCTTCACTGCGGCTAAGAAGGACT 11860997 Query 162854 GGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCA 162913 || | ||| || || ||||| | |||||| | |||||||| ||||||||||||| Sbjct 11860998 CCTCTGATTTTCTGTCCACGTGAATGCAGTAGAAGTTCTGAGGCATATAGATGGCCCTCA 11861057 Query 162914 GTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACT 162973 | | || || | ||| || || || ||||| ||||| || ||||| ||||| || |||| Sbjct 11861058 GGAGCCTGTCCAGCATTTCAATTTTGTGGTGAACCACTATGGAATATGCTATTGGAAACT 11861117 >seq1 Length=114275543 Score = 201 bits (222), Expect = 1e-46 Identities = 221/294 (75%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | || || || || || || ||||| |||| || | || Sbjct 100821087 CATAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGATATTGAAGAGAC 100821146 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| |||||| ||||| || || | ||| || ||| || Sbjct 100821147 ACATGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAAGGTGATTGTTGAGTTTTGGA 100821206 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || | || ||||||| | || ||| || | |||||||| ||||| || || Sbjct 100821207 GTCCCAGCTCAGTGATGTTCATCTTGTTCTTATAGGCTGGCTGGACTACAACGCCATGGA 100821266 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| ||||| ||||||| |||||| ||||| |||||||| | |||||||| || || | Sbjct 100821267 GCTCACTGAAGGTGGCCAGGTTTTCTGGGCTTGTAGCCTTCTTTTTCTGCCATGTCACAA 100821326 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCA 172064 ||| || || | | ||||| |||||||| ||||| |||||||||||||||| Sbjct 100821327 CTAAGACATCCTGGGAAGTTTGTAGAGAGCACCTTAAGGAAGCAGGTGTGTTCA 100821380 Score = 129 bits (142), Expect = 7e-25 Identities = 165/224 (74%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||| ||||||||| || || |||||||||| ||| || || | ||| |||||||||| Sbjct 100818831 ACACTTTGTCTGAAGTAGGTCACAGTCCCCAGGTGCAACACCTGGCAGATCACCTCCT-- 100818888 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 ||||||| || | || || ||||| || ||||| ||||| |||||||| || ||||| Sbjct 100818889 -TTCCCACCTGTTTCTTGGGGTCTTTGACCTGAAGGATGCTGGTAACAGAAGTGGTCCCA 100818947 Query 171623 TTACGATGTAGAACGGTTTT-AGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681 || ||| | || | | | |||||| ||||| || || ||||| || ||||| | Sbjct 100818948 TTTGGAT-TGGAGAGAATCTCAGTACTGTTTTCAATCCCTGATCCACGGACCTTCCAGGA 100819006 Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 || | || ||||| | ||||| ||||||||||| || |||| Sbjct 100819007 GATCATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 100819050 >seq1582 Length=98468360 Score = 197 bits (218), Expect = 2e-45 Identities = 250/344 (73%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 162630 CTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATT 162689 ||| |||| | ||| || ||||| ||||| |||| ||||| || ||||||| ||||| Sbjct 21621609 CTTGAGCTTCCTCACAATTTCTAGGTTGGTTTTAATAGGAAAATCCATGCCGCACAGATT 21621668 Query 162690 AATAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGC 162749 || | || ||||| |||| | ||||||||| |||| | ||||| || ||||| Sbjct 21621669 TATCAAGTACTTCCAGCGTGCGCTCATTCCGTACAGGTCCTTCATGCAGTTGAGGTCGGC 21621728 Query 162750 CTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATT 162809 ||| |||||||||||||||||||| || || ||||||||| | |||| || ||||| || Sbjct 21621729 CTGAACGCGACTCCACGACGCGTAAACCACACTCTCCAACTGACTGGCCACGAAGACGTT 21621788 Query 162810 GTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATC 162869 |||||| || | || ||| |||| || | |||| | || | ||| || || Sbjct 21621789 ACTGAAACAGGACGCGATGCCCTTCACCGCGGCTAAGAAGGACTCCTCTGATTTTCTGTC 21621848 Query 162870 TACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACAT 162929 ||||| | |||||| | |||||||| |||||||||||||| | || || | ||| Sbjct 21621849 CACGTGAATGCAGTAGAAGTTCTGAGGCATATAGATGGCCCTCAGGAGCCTGTCCAGCAT 21621908 Query 162930 CTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACT 162973 || || || ||||| ||||| | ||||| ||||| || |||| Sbjct 21621909 TTCAATTTTGTGGTGAACCACTAAGGAATATGCTATTGGAAACT 21621952 >seq947 Length=108171978 Score = 86.0 bits (94), Expect = 7e-12 Identities = 216/326 (66%), Gaps = 3/326 (1%) Strand=Plus/Minus Query 162650 CTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAA 162709 |||| ||||| |||| ||||| | | ||||| ||||| || | || ||||| | Sbjct 95075669 CTAGGTTGGTTTTAATAGGAAAATTCATACCGCACAGATTTATCAAGTACTTCCAGTCTG 95075610 Query 162710 CGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACG 162769 | || | | | || |||| | ||||| || || ||| | ||||||||||| | Sbjct 95075609 CACTTACAGGG-AGAGGTCCTTCATGCAGTTGAGGTCAGCCGAACCCCGACTCCACGATG 95075551 Query 162770 CGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCC 162829 |||| || || ||||||||| | |||| |||||||| || |||||| || || || Sbjct 95075550 CGTAAACTACACTCTCCAACTGACTGGCCACAAAGACGTTACTGAAACAGGACACAATGT 95075491 Query 162830 CCATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889 |||| | || | |||| | |||| | | | || ||||| | ||| || | || Sbjct 95075490 CCATTGCTGCAGCTAAGAAGGACAACTCCGATATTTTGTCCACGTGAATGCAATAGAAAT 95075431 Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949 ||| || || ||||||||| || | || ||| || || || || || |||| Sbjct 95075430 TCTATGGCATATACATGGCCCTC--CAAGCCTTCACGCATTTCAATTTTGTGATGAACCA 95075373 Query 162950 CGATAGAATACGCTATGGGGAACTCA 162975 | | |||| | ||||| || ||| || Sbjct 95075372 CTACAGAAGATGCTATTGGAAACCCA 95075347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578376484988800