Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 141 2e-28 seq233 131 4e-25 seq2763 123 6e-23 seq1230 95.1 3e-14 seq4546 89.7 1e-12 >seq1 Length=114275543 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||||||||| |||||| | ||||| ||| || || ||| | ||| Sbjct 8597509 AAAACCCTTACAGGAAAAACTATCACTCTTGAAGTTGAACCCTCGGATACAATAGAAAAT 8597568 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || |||||||| || || Sbjct 8597569 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATTTTT 8597628 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| | ||||||||| | |||||| | || |||||| | || || ||||| Sbjct 8597629 GCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCC 8597688 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 8597689 ACTCTTCATCTTGTGTTGAGACTTCG 8597714 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||| ||||| || || | || ||||||| |||||| Sbjct 8597714 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 8597655 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||| || ||||| || || || || || | ||| ||| Sbjct 8597654 CGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGA 8597610 >seq233 Length=141296404 Score = 131 bits (144), Expect = 4e-25 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || |||||||| || |||||| |||| || ||| || || ||| | ||| Sbjct 109921877 AAAACCCTTACAGGAAAGACTATCACTCTGGAGGTCGAACCCTCGGATACAATAGAAAAT 109921818 Query 206245 GTAAAGCAAAAGATT----CAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTAT 206300 |||||| ||||| || || |||||||||||| || || |||||||| || Sbjct 109921817 GTAAAGGCCAAGATAAGGCCAGGATAAAGAAGGAATTCCTCCTGATCAGCAAAGACTGAT 109921758 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 || || || ||||| | ||||||||| | |||||| | || |||||| | ||||| || Sbjct 109921757 TTTTGCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGACTACAACATTCAGAAGGA 109921698 Query 206361 GTCTACTCTTCACCTTGTTTTGAGACTT 206388 ||| |||||||| ||||| ||||||||| Sbjct 109921697 GTCCACTCTTCATCTTGTGTTGAGACTT 109921670 Score = 89.7 bits (98), Expect = 1e-12 Identities = 101/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 206257 ATTCAAGAAAAAGAAGGAA-TTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315 |||| |||| ||||| ||| |||| || | |||||||| ||||| || || ||| | Sbjct 108364874 ATTCCAGAATAAGAAAGAAATTTTTCCTCATCAGCAAAGACTGATCTTTGCTGGCAAGGA 108364933 Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT 206375 ||||||||||| | ||||| | || |||||| | || |||||||| |||||||| | Sbjct 108364934 ACTGGAAGATGGATGTGCTTTGTCTGACTACAACATTCAAAAAGAGTCCACTCTTCATTT 108364993 Query 206376 TGTTTTGAGACTTC 206389 | | |||||| ||| Sbjct 108364994 TATGTTGAGATTTC 108365007 >seq2763 Length=65901067 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | |||||||| || ||| || | || || ||| || || ||| | ||| Sbjct 824440 AAAACCCGTACAGGAAAGACTATCCCTCTCGAGGTTGAACCCTCGGATACAATAGAAAAT 824381 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || |||||||| || || Sbjct 824380 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATTTTT 824321 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| | ||||||||| | |||||| | || |||||| | || || ||||| Sbjct 824320 GCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCC 824261 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 824260 ACTCTTCATCTTGTGTTGAGACTTCG 824235 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| ||||| ||||| |||||| |||| Sbjct 60922493 AAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGTGACACCATCGAGAAT 60922552 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || || ||| || || || ||||| Sbjct 60922553 GTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCTCCTGACCAGCAGAGGCTCATCTTT 60922612 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | || |||||| ||||||||||||| Sbjct 60922613 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCG 60922672 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 60922673 ACCCTGCACCTGGT 60922686 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||| ||||| || || | || ||||||| |||||| Sbjct 824235 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 824294 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||| || ||||| || || || || || | ||| ||| Sbjct 824295 CGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGA 824339 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| |||| ||||| ||| Sbjct 60922709 CAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGAT 60922768 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| || || ||| || Sbjct 60922769 ACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCTCCTGACCAGCAG 60922828 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| |||||||||| | ||| | | || |||||| || Sbjct 60922829 AGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATC 60922888 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || ||||| || Sbjct 60922889 CAGAAAGAGTCGACCCTGCACCTGGT 60922914 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || || ||||| ||||| ||||| ||| Sbjct 60922937 CAGATTTTCGTCAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGTGAT 60922996 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || ||||| || || ||| || Sbjct 60922997 ACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCTCCTGACCAGCAG 60923056 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| |||||||||| | ||| | | || |||||| || Sbjct 60923057 AGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATC 60923116 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || ||||| || Sbjct 60923117 CAGAAAGAGTCGACCCTGCACCTGGT 60923142 >seq1230 Length=159902609 Score = 95.1 bits (104), Expect = 3e-14 Identities = 107/143 (75%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 206246 TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCG 206305 ||||| |||||||| || || ||| |||| || || |||||||| || || | Sbjct 126082832 TAAAGGCCAAGATTCAGGATAAGGAAAAAATT---CCTGAGCAGCAAAGACTGATTTTTG 126082776 Query 206306 CCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTA 206365 |||| ||||| ||||||||||||| | ||| | || |||||| | || || ||||| | Sbjct 126082775 CCGGCAAGCAACTGGAAGATGGAAGTAGTTTATCTGACTACAACATTCAAAAGGAGTCCA 126082716 Query 206366 CTCTTCACCTTGTTTTGAGACTT 206388 |||| || ||||| ||||||||| Sbjct 126082715 CTCTGCATCTTGTGTTGAGACTT 126082693 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 204754 AAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCT 204813 ||||||||| ||||| || ||||| ||||| || || | || ||||||| ||| | || Sbjct 126082693 AAGTCTCAACACAAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGATAAACTACT 126082752 Query 204814 TCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||| ||||| ||||| || || || | ||| || Sbjct 126082753 TCCATCTTCCAGTTGCTTGCCGGCAAAAATCAGTCTTTGCTG 126082794 >seq4546 Length=144923918 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 206197 GGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAG 206256 || || || || ||| | || || ||| || || ||| | ||| |||||| ||| Sbjct 25086823 GGGAAGACCATGACTCTCGAGGTTGAACCCTCAGATACATTAGAAAATGTAAAGACCAAG 25086882 Query 206257 ATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAG 206316 || || || || ||||||||| | ||| |||||||| || || || || ||||| Sbjct 25086883 ATCCAGGATAAGGAAGGAATTCCTCTTGACCAGCAAAGACTGATTTTTGCTGGCAAGCAA 25086942 Query 206317 TTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTT 206376 ||||||||||| | ||||| || || ||| | || || ||| | | |||||| ||| Sbjct 25086943 CTGGAAGATGGACGTACTTT----GACTATAACATTCAAAAGGAGACCATTCTTCATCTT 25086998 Query 206377 GTTTTGAGACTT 206388 || ||||||||| Sbjct 25086999 GTGTTGAGACTT 25087010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181704539117438