Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3640 102 8e-17 seq520 93.3 4e-14 seq1 89.7 5e-13 seq2763 84.2 2e-11 >seq3640 Length=31815103 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | | |||||||| || ||||||||||| | ||| || Sbjct 21636574 CAAGCGCAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCG 21636515 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || |||| | |||| || | ||| ||||| ||||| |||||||| Sbjct 21636514 TCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCTTC 21636455 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || ||| || | | || | || ||| | |||||||| |||| || Sbjct 21636454 CTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGGGT 21636395 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || ||||| || || | || |||||||| Sbjct 21636394 GATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 21636356 >seq520 Length=73916538 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || ||| | |||||||| || ||||||||||| | ||| || Sbjct 72484105 CAAGCGCAGGACCAAGTGCATGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCG 72484164 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| ||||| || || | | |||| || | ||| |||| || || |||||||| Sbjct 72484165 CCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCGGATCAGGGGGAATGCCTTC 72484224 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || ||| || | | || | ||||| | ||||| || |||| || Sbjct 72484225 CTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGT 72484284 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || ||||| || || | || |||||||| Sbjct 72484285 GATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 72484323 >seq1 Length=114275543 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || ||||| |||||| || || || || | | Sbjct 8597687 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCTAGTTGCTTGCCAGCA 8597628 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | || ||||| ||||| || ||||| ||||| || || || | Sbjct 8597627 AAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 8597568 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || ||||| | || | ||||| || || || |||||| Sbjct 8597567 TTTTCTATTGTATCCGAGGGTTCAACTTCAAGAGTGATAGTTTTTCCTGTAAGGGTTTTT 8597508 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 8597507 ACGAAAATCTGCAT 8597494 >seq2763 Length=65901067 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||| | |||| || | | | |||||||| || ||||||||||| | || || Sbjct 60923152 CAAGCGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCG 60923093 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || || | | |||| || | ||| || || ||||| || ||||| Sbjct 60923092 GCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCTTC 60923033 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||||| || || |||| | || | ||||| | |||||||| || | || Sbjct 60923032 CTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAAGGT 60922973 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || ||||| || || | |||||||||||| Sbjct 60922972 GATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 60922934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476565457240080