Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq233 96.9 3e-15 seq2763 87.8 2e-12 >seq1 Length=114275543 Score = 104 bits (114), Expect = 2e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || |||||||| | || |||||| | ||||| | ||||| ||| | Sbjct 8597490 CAAGATGCAGATTTTCGTAAAAACCCTTACAGGAAAAACTATCACTCTTGAAGTTGAACC 8597549 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| || || | ||||| || || ||||| || || || || || || Sbjct 8597550 CTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 8597609 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| |||| | ||||| ||||| ||||||| | | | | || || Sbjct 8597610 TCAGCAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGACTA 8597669 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| |||||||| || ||||| ||||| | ||||| ||| Sbjct 8597670 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGA 8597709 >seq233 Length=141296404 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || |||||||| | || ||||| | ||||| | || |||||| | Sbjct 109921896 CAAGATGCAGATTTTCGTAAAAACCCTTACAGGAAAGACTATCACTCTGGAGGTCGAACC 109921837 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTA--CC--GATAAAGAGGGTATACCGC 25286 | ||||| || || | ||||| || || | || |||||||| || || || | Sbjct 109921836 CTCGGATACAATAGAAAATGTAAAGGCCAAGATAAGGCCAGGATAAAGAAGGAATTCCTC 109921777 Query 25287 CCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCG 25346 | |||||||||||||| |||| | ||||| ||||| ||||||| | | | | | Sbjct 109921776 CTGATCAGCAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTG 109921717 Query 25347 ATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 | ||||| ||||| || || ||||| ||||| | ||||| ||| Sbjct 109921716 ACTACAACATTCAGAAGGAGTCCACTCTTCATCTTGTGTTGAGA 109921673 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || |||||||| | || ||||| | ||||| |||| |||||| | Sbjct 108314879 CAAGATGCAGATTTTCGTAAAAACCCTTACAGGAAAGACTATCACTCTCGAGGTCGAACC 108314938 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| || || | ||||| || || ||||| || || || || || || Sbjct 108314939 CTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGA 108314998 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| |||| | ||||| ||||| ||||||| | | | | || || Sbjct 108314999 TCAGCAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGACTA 108315058 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 | |||||||| | ||||| ||||| | ||||| ||| Sbjct 108315059 TACCATTCAAAAGCAGTCCACTCTTCATCTTGTGTTGAGA 108315098 >seq2763 Length=65901067 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || |||||||| || ||||| | ||| | |||| || ||| || Sbjct 824455 ATGCAGATTTTCGTAAAAACCCGTACAGGAAAGACTATCCCTCTCGAGGTTGAACCCTCG 824396 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | ||||| || || ||||| || || || || || |||||| Sbjct 824395 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 824336 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| |||| | ||||| ||||| ||||||| | | | | || ||||| Sbjct 824335 CAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGACTACAAC 824276 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 |||||||| || ||||| ||||| | ||||| ||| Sbjct 824275 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGA 824240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445051682064960