Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1230 340 2e-88 seq1 228 9e-55 seq3188 176 5e-39 seq3973 150 2e-31 seq233 116 4e-21 >seq1230 Length=159902609 Score = 340 bits (376), Expect = 2e-88 Identities = 499/704 (71%), Gaps = 4/704 (1%) Strand=Plus/Minus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCC--AGCTGAATTTTCAGGGGCTCCA 146929 || |||||||| ||||| |||| || | || || |||||||| ||||| ||||| | Sbjct 40602526 ATTTTGAGCTTCGGGAAAGGTCTTGGTT--CTCGCTGAAGCTGAATCTTCAGCGGCTCGA 40602469 Query 146930 CGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGC 146989 ||| || ||||| | ||| || || |||| || || |||||||| || ||||| || | Sbjct 40602468 TGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTATGAACAAAGTCACCTGGCTTGAGCC 40602409 Query 146990 CGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCC 147049 ||| | ||| || | |||||| |||||||| | ||||||||| |||||||| || | | Sbjct 40602408 GGGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAATGGCATGC 40602349 Query 147050 CCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGT 147109 ||||||||||||| ||||||| ||||||||||||||| || ||||| ||||| |||||| Sbjct 40602348 CCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTCCACCACGT 40602289 Query 147110 AAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCC 147169 | |||||||| |||| ||| ||||| ||||||||||| || || || || |||| Sbjct 40602288 AGAACTGGCAGAGGACGTGACACGGGGGCAGCGCCATCAGAGGGAGATCTTTTGGATTCC 40602229 Query 147170 AGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACC 147229 | || | | | | | ||| || |||| | || || ||||| || Sbjct 40602228 AAGCACACATGATGATTCTTCTGTCGTCAGGGTGGGTTTTGATGGTATCGATCACTTTTT 40602169 Query 147230 TCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAA 147289 ||| ||||| || || || || || | || | || ||| |||||||| Sbjct 40602168 GCAGTTGGTCAACTCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAA 40602109 Query 147290 AGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGC 147349 | ||||||||||||||||| || ||||| |||| ||| || |||| ||||| | Sbjct 40602108 AATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTAGAGAATC 40602049 Query 147350 CCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGG 147409 || | | ||||| || |||| || | ||| |||||||| ||||||||| | | Sbjct 40602048 CCAGGCCATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATCTTCACTCCCTTCGAAG 40601989 Query 147410 AGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCC 147469 | || || |||| || ||||| ||| ||| ||||| |||| |||||||||||| ||| Sbjct 40601988 ACAGTTCTTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCT 40601929 Query 147470 TCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATACCTCGCCT 147529 |||| || || ||||| |||||||| || || | || ||||| || | ||||| Sbjct 40601928 TCCAGAACACATGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCT 40601869 Query 147530 GGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCC 147573 | || ||||| |||| ||||| |||||||| | ||| ||| Sbjct 40601868 GCAGGCCGAACACCTACAGGGTGCCGGTGCCCGTGCGGTCGTCC 40601825 >seq1 Length=114275543 Score = 228 bits (252), Expect = 9e-55 Identities = 242/319 (76%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||| ||||| | || | | ||||||||| || || ||| | | ||||| || Sbjct 100821408 GTGGTGACTGAGGATCAAAGAGAGAGGCTGAACACACCTGCTTCCTTAAGGTGCTCTCTA 100821349 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || ||||| ||||| || | |||| || |||||||||| ||| | || | ||||| Sbjct 100821348 CAAACTTCCCAGGATGTCTTAGTTGTGACATGGCAGAAAAAGAAGGCTACAAGCCCAGAA 100821289 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 ||| || || || || | ||| || || || |||||||| || |||||| ||||| Sbjct 100821288 AACCTGGCCACCTTCAGTGAGCTCCATGGCGTTGTAGTCCAGCCAGCCTATAAGAACAAG 100821229 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 || |||||||| |||| ||||||||||||||||| ||||| || |||||||||||| | Sbjct 100821228 ATGAACATCACTGAGCTGGGACTCCAAAACTCAACAATCACCTTCTGGAATACCACCCTG 100821169 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| || ||||| |||| || ||||| || | |||||| |||||||| ||||| || Sbjct 100821168 GAGGATGAAGGGTGTTACATGTGTCTCTTCAATATCTTTGGTTCTGGGAAGATCTCAGGA 100821109 Query 171372 GTGGCCTGCCTCACCCTCT 171390 |||||||||||||||| Sbjct 100821108 ACAGCCTGCCTCACCCTCT 100821090 Score = 206 bits (228), Expect = 3e-48 Identities = 212/277 (77%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 ||||||||||| || || || || || |||| | ||| |||||||| || ||||| || Sbjct 100819096 GTGCAGCCCACGGTATTCCTTCACTACAAATACTCTGAAGACCACCTAAATATCACTTGC 100819037 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||| ||||||||| | || ||| | |||||| | || |||| |||||| Sbjct 100819036 TCTGCCACTGCCCGCCCAGCCCCCATGATCTCCTGGAAGGTCCGTGGATCAGGGATTGAA 100818977 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| ||| |||| ||| || | ||||| || |||||||| ||||| | || || Sbjct 100818976 AACAGTACTGAGATTCTCTCCAATCCAAATGGGACCACTTCTGTTACCAGCATCCTTCAG 100818917 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||||| ||| ||||||||||||| |||||||| |||| ||||||||| Sbjct 100818916 GTCAAAGACCCCAAGAAACAGGTGGGAAAGGAGGTGATCTGCCAGGTGTTGCACCTGGGG 100818857 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| || |||| || ||| ||| ||||| |||| Sbjct 100818856 ACTGTGACCTACTTCAGACAAAGTGTGAGCAAAGGTA 100818820 Score = 127 bits (140), Expect = 2e-24 Identities = 203/287 (71%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | | || || | ||||||| | ||||||| |||||| Sbjct 27348574 GTACTCCCTGGTGTTCATCGTGGGCCTGCTGGGCAATGTCGTGGTGATAGCGATCCTCAC 27348633 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||||||| |||||||||||| ||| |||||||| |||| ||||| |||| || ||| Sbjct 27348634 CAAGTACAGGAGGCTCAGGATTCTGAGCAACATCTACCTGCTCAACTTGGCAATTTCTGA 27348693 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | ||||| || || || ||||||||| ||| || ||| |||| || Sbjct 27348694 CTTGCTCTTCGTCTTCACTCTGCCATTCTGGATTCAC-TCCGCT-GGGTGGAA----TGA 27348747 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | | |||| |||||||||| | | ||| |||| | | || || | Sbjct 27348748 GTGGGTCTTTGGCCACGGCATGTGTAAGCTCCTCTCGGGGCTTTACCAAATGAGCTTGAA 27348807 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTG 8896 |||||| || | || ||||| ||| |||| | || ||||| |||| Sbjct 27348808 CAGCGAGATCTTCTTCATCATGCTGATGACAATTGATAGGTA-CTTG 27348853 Score = 105 bits (116), Expect = 8e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||| ||| | | || | | ||||| ||||||| || | ||||||| Sbjct 27310623 GTACTCCCTGGTATTTATCATCGGCGTGGTGGGCAACATCCTGGTGGTCTTGGTCCTCAA 27310564 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||||||||| ||||| | |||||||| ||||| ||| |||||||||||||| || Sbjct 27310563 GCAGTACAAGAAGCTCAAAAGCATGACCAGCATCTACCTCTTCAACCTGGCCCTCTCCGA 27310504 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | ||||| || ||||| |||||| ||| Sbjct 27310503 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGACT 27310466 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| | ||| ||||||||| ||| ||||||||||||||||| | Sbjct 27309907 TGGACCTGGCCATGCAGGTGACGGAGGTGATCGCCTACACACACTGCTGCGTCAACCCGG 27309848 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 | |||||||| ||||| ||||| || |||| Sbjct 27309847 TGATCTACGCCTTTGTCGGCGAGAACTTCC 27309818 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | || ||||| | ||||| ||||| |||| |||| ||| Sbjct 27441147 TACTCGCTGGTGTTCATCTTCGGGCTTGTGGGCAACTTGCTGGTCGTCCTCATCCTGATA 27441206 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||||| ||||| || |||||| |||||| |||| ||||||||||| | ||| Sbjct 27441207 AACTGCAAGAAGCTCAAGAGCATGACGGACATCTACCTGCTCAACCTGGCCATCTCCGAC 27441266 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||||| | | ||||| |||| || ||| Sbjct 27441267 CTGCTCTTCCTGCTCACCATCCCGTTCTGG 27441296 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | | ||||| | ||||| ||||| |||| ||| ||| Sbjct 27455050 TACTCGCTGGTGTTCATCATCGGGCTTGTGGGCAACTTGCTGGTCGTCCTCACCCTGATA 27455109 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||||| ||||| || |||||| |||||| |||| ||||||||||| | ||| Sbjct 27455110 AACTGCAAGAAGCTCAAGAGCATGACGGACATCTACCTGCTCAACCTGGCCATCTCCGAC 27455169 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||||| | | ||||| |||| || ||| Sbjct 27455170 CTGCTCTTCCTGCTCACCGTCCCGTTCTGG 27455199 >seq3188 Length=83067054 Score = 176 bits (194), Expect = 5e-39 Identities = 138/165 (84%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| || ||||| | ||| || | |||||| |||||||| | ||||||||| |||||||| Sbjct 66355485 CTTGAGCCCGGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAA 66355426 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || |||||||||||||| ||||||| ||||||||||||||| || ||||| ||||| Sbjct 66355425 CGGCACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTC 66355366 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||| ||| ||| ||||| ||||||||||| Sbjct 66355365 CACCACGTAGAACTGGCAGAGGGCGTGACACGGGGGCAGCGCCAT 66355321 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 147282 GGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTG 147341 ||||||||| ||||||||||||||||| || ||||| |||| ||| || |||| Sbjct 66352254 GGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTCCTCTGGT 66352195 Query 147342 CGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 ||||| ||| | | ||||| || |||| || | ||| |||||||| |||||| Sbjct 66352194 GGAGAATCCCAGGCCATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATCTTCACTCC 66352135 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 ||| | || | || |||| || ||||| ||| ||| || Sbjct 66352134 CTTCGAAGACAATTCTTTAGCGTTTGTGGATCCCTGGAAGA 66352094 >seq3973 Length=36798880 Score = 150 bits (166), Expect = 2e-31 Identities = 132/167 (79%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||| ||| |||||||||||| Sbjct 30404666 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTCTACCTGGAGGAGGTGA 30404607 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| ||||||||||| || ||||| || |||| Sbjct 30404606 TGCCGCAGGCTGAGAACCAC------------GGCCCGGACATCAAAGAGCACGTGAACT 30404559 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| || || || || || |||||||||| ||| Sbjct 30404558 CCCTGGGGGAGAAGCTGAAAACGCTGAGGCTGCGGCTGCGGCGCTGT 30404512 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || ||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 30402314 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 30402255 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||| | |||||||||| || |||| Sbjct 30402254 TAGAATCCTACATGACAATGAAGATGA 30402228 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 178081 AGTCTGAAAACAATTGCACTCACTTTCCAACCAGTTTGCCTCACATGCTCCATGAGCTCC 178140 ||||||| |||| ||||| ||||| ||| |||| ||||||||||||||| ||||||| Sbjct 30405952 AGTCTGAGAACAGCTGCACCCACTTCCCAGCCAGCCTGCCTCACATGCTCCGGGAGCTCC 30405893 Query 178141 GGGCCGCTTTTAGCAGAGTAAAGACttttttt 178172 | || || || |||| || |||||||| ||| Sbjct 30405892 GAGCTGCCTTCGGCAGGGTGAAGACTTTCTTT 30405861 >seq233 Length=141296404 Score = 116 bits (128), Expect = 4e-21 Identities = 196/281 (70%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 147293 GCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTT-TCTGTGCGAGAAGCCC 147351 |||||||||||||||| || ||||| |||| | ||| || |||| ||||| || Sbjct 68914618 GCCTCCACTGGAAGCCATAAACTGGGCCCACACC-CCGTTCTCCTCTGGTGGAGAACACC 68914676 Query 147352 GCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAG 147411 || | | | | || |||| | || ||| |||||||| ||||||||||| || Sbjct 68914677 AGCCTATCCAAAGAGTCTTGGGATCTGTTGGCATCCCAGATTTTCACTCCCTTGGAAGAC 68914736 Query 147412 AGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTC 147471 || || ||||||| ||| | ||| ||| || || |||| |||||||||||| ||| || Sbjct 68914737 AGTTCTTTAGAGTTTGTGAATCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTC 68914796 Query 147472 CAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATACCTCGCCTGG 147531 || || || || ||||| |||||||| || | | || ||| | || | |||| Sbjct 68914797 CAGAACACACTTTTGGTTGTCAGCAGAGGAAGTTCATCTCTCCGGTTGTAGCGTGCCTCT 68914856 Query 147532 TCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTC 147572 | || | || |||| ||||| ||||| || ||||| || Sbjct 68914857 ACGCCGAGCATCTACAGGGTGCCGGTGCCTGTGCTGTCATC 68914897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583431999739200